Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1781 ACAGCTTGGAGTTGCTACCTACTATTACCATTTTTTATTAGCATGGGAAGAAAAGCTGCTACTACTTGTTCCTCTTCCTCTAACATTTCTTCAAATGCTTCCTTGAATCTGAGACTTGCACTCAGCACTCACGAAGAACGTGGTGGAAGCCTGTTTGCGAAGGTGTACATGGAAGGCATTCCAATAGGGAGGAAACTCAACATATTAGCACATGGAAGCTACCATGAGCTTGTTAAGAGACTTGAGAACATGTTCGACACCACCATTCTCTGGGGTACAGAGATGGATGAAGTTGTAGTTCAACCTGGTGAGAGATGCCATGTATTCACTTATGAAGATGACGGAGGAGATCTTGTTATGATTGGGGATGTTCCTTGGGAGATTGGCATTACTACGTTAGAAACCACGTTAACCTAG 417 0.4317 TAWSCYLLLPFFISMGRKAATTCSSSSNISSNASLNLRLALSTHEERGGSLFAKVYMEGIPIGRKLNILAHGSYHELVKRLENMFDTTILWGTEMDEVVVQPGERCHVFTYEDDGGDLVMIGDVPWEIGITTLETTLT* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1781 138 Gene3D - 44 136 - -
Amo01g1781 138 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 49 131 IPR003311 GO:0005634|GO:0006355
Amo01g1781 138 Pfam AUX/IAA family 45 132 IPR033389 -
Amo01g1781 138 ProSiteProfiles PB1 domain profile. 50 138 IPR000270 GO:0005515
Amo01g1781 138 SUPERFAMILY CAD & PB1 domains 45 132 - -
Amo01g1781 138 PANTHER AUXIN-INDUCED PROTEIN 49 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1781 Amo-Chr1 43725476 43728151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1781 54 126 B3 DNA Binding Superfamily AT1G59750 36.000 2.50e-08 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo01g1781 AUX_IAA 3.5e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1781 K14484 - gmx:100818376 125.946