Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1752 ATGGAGAGACAGAAATGCTGCAAGCTCTGCTCAAGAACCTTCCCTAATGGAAGAGCCCTAGGTGGCCACATGAAGGCTCACTTGGCCACTTTTCCTCTCCCCCCTAAACCCCCTCAACCACCAGCACCACCATTACCTTCTTCTGAATCCTCCTCTTCATTTTCCTCCTTCTCAGAATCRGAACCCGAAGACAAGRCTGCTTTGRTTTATGGGTTGAGGGAGAATCCCAAGAAGAGTTTCAGAGTCGCAGATCCCGAGTTCTCTCCCTTGGCTGCACCACTTCTACCGCCACCTGACTCTGTTGCGGTTCAAGACAGAGAGAGCGAGACAGAGTCATCAAAGAAACCAACTCGCCAACGATCCAAGCGAACTTGGAGAGCAAGGTCCATTCTTCACAACCATGAAGACGAYAAAGAACAGCTTAAGAAGAAGCAGCCCAAGCTTGGATTTATGGAACATGAACATGAATATGAAGCAGAACCGGTGAGCTCMGTCTCGGAAACTTCAGTAGTGGAAGACGTCGCCATGTTCCTGGTTATGCTCTCAAGGGACACGTGGTCCAACAAAGATGCAATACTAGTAAAACAAGAAGGAGAAGTTGAAAGATCAAAGGCTGGGAGCGGCAATGGGATCAAGATGAAGAAGGTTCGTGTTCGCGGGAAGCATAGTCRTCAGTGTGAGAATTGCGGTAAAACTTTTCGATCTTCGAGGGCGTTGGGAAGTCATAGGAGCATATGCTGTGACGGAGGARGATCAGGAGCAAGTGATAGAATCTTCCAATGCCCKTTTTGTTTCAAAATCTTTGGCTCTGGCCAAGCCCTTGGCGGTCACAAGAGATCTCATCTCATCGCCATGGCGGCACCTTCCTCCTCTTCTTCCACTGCCAAGAATTTCATAGATCTCAACTTGCCTGCTCCACTAGAAGAACAACATGAAGATGACCTTGGTGTTGTTTCGGATACTTTATCATCTGCGTTGAAAAGAACGAAGTATCCGGGTAAAAGGAGGGAGGTCCCATACAATTCGTATCGAAGAATCAGTCAGGTTTATGATAATAAAGTACAGGATATGCTGATCAAATAG 1083 0.47 MERQKCCKLCSRTFPNGRALGGHMKAHLATFPLPPKPPQPPAPPLPSSESSSSFSSFSESEPEDKXALXYGLRENPKKSFRVADPEFSPLAAPLLPPPDSVAVQDRESETESSKKPTRQRSKRTWRARSILHNHEDDKEQLKKKQPKLGFMEHEHEYEAEPVSSVSETSVVEDVAMFLVMLSRDTWSNKDAILVKQEGEVERSKAGSGNGIKMKKVRVRGKHSXQCENCGKTFRSSRALGSHRSICCDGGXSGASDRIFQCPFCFKIFGSGQALGGHKRSHLIAMAAPSSSSSTAKNFIDLNLPAPLEEQHEDDLGVVSDTLSSALKRTKYPGKRREVPYNSYRRISQVYDNKVQDMLIK* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1752 360 Gene3D Classic Zinc Finger 193 286 - -
Amo01g1752 360 MobiDBLite consensus disorder prediction 19 128 - -
Amo01g1752 360 MobiDBLite consensus disorder prediction 66 81 - -
Amo01g1752 360 MobiDBLite consensus disorder prediction 104 118 - -
Amo01g1752 360 MobiDBLite consensus disorder prediction 31 47 - -
Amo01g1752 360 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 320 IPR044303 GO:0006355
Amo01g1752 360 SUPERFAMILY beta-beta-alpha zinc fingers 6 243 IPR036236 -
Amo01g1752 360 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 320 - -
Amo01g1752 360 SMART c2h2final6 5 27 IPR013087 -
Amo01g1752 360 SMART c2h2final6 259 281 IPR013087 -
Amo01g1752 360 SMART c2h2final6 224 244 IPR013087 -
Amo01g1752 360 ProSitePatterns Zinc finger C2H2 type domain signature. 6 27 IPR013087 -
Amo01g1752 360 Pfam C2H2-type zinc finger 6 29 - -
Amo01g1752 360 Pfam C2H2-type zinc finger 226 243 - -
Amo01g1752 360 Pfam C2H2-type zinc finger 259 282 - -
Amo01g1752 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Amo01g1752 360 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
Amo01g1752 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 281 IPR013087 -
Amo01g1752 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 245 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1752 Amo-Chr1 41617267 41619349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1752 1 310 C2H2 Transcription Factor Family AT1G02030 35.045 1.64e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo01g1752 zf-C2H2_6 7.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1752 - - adu:107486002 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2492 05 52753068 52754000 Amo01g1752 01 41617267 41619349 PCT
Amo01g1752 01 41617267 41619349 Amo05g2492 05 52753068 52754000 PCT