Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1740 ATGGGTGCTTATAAGTATGTTTCGGAGCTCTGGCGCAAGAAGCAATCGGATGTAATGAGATTCTTGCAGAGGGTAAGGTGCTGGGAGTATCGTCAGCAGCCTTCCATTGTCCGTGTCACTAGGCCAACCCGCCCCGACAAGGCTCGTCGCTTGGGTTACAAGGCCAAACAGGGATATGTGGTTTACCGTGTTCGTGTGCGAAGGGGTGGCCGCAAGAGACCTGTTCCAAAGGGTATTGTTTATGGCAAGCCCACGAACCAGGGTGTTACTCAACTGAAATTTCAGCGAAGCAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGGAAGCTAGGTGGCCTCAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCGACATACAAATACTTTGAGATCATTATGGTGGATGTTGCGCACGCAGCTATTAGAAATGATCCAAGGATCAATTGGCTCTGCAATCCGGTCCATAAACACAGGGAACTTTGCGGCCTCACCTCTGCTGGGAAGTCTAACAGGGGTTTACGTGGCAAGGGACATCTTTACCACAAAAATCGTCCTTCCCGCAGGGCAACCTGGAAGAGAAACAATACCCTTTCCCTCCGCCGTTACCGTTGA 615 0.5122 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIIMVDVAHAAIRNDPRINWLCNPVHKHRELCGLTSAGKSNRGLRGKGHLYHKNRPSRRATWKRNNTLSLRRYR* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1740 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Amo01g1740 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Amo01g1740 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 - -
Amo01g1740 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Amo01g1740 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Amo01g1740 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Amo01g1740 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1740 Amo-Chr1 41009211 41011398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1740 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 91.176 1.55e-126 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1740 K02877 - gmx:100306052 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1740 01 41009211 41011398 Amo11g1269 11 43911416 43913680 hybridization
Amo05g2472 05 52346760 52348968 Amo01g1740 01 41009211 41011398 PCT
Amo01g1740 01 41009211 41011398 Amo05g2472 05 52346760 52348968 PCT