Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1737 ATGGCTCCAAAGAATAATAAAAAGTCAACTAAGATATCATCAGTGATGATGAATAGAGGGGCATGGACCCCGGAAGAAGATGATAAACTAGCTCGGTTCATTGAAATTCATGGTGCAAAGAGGTGGAAGACTCTTGCAGTCAAATCAGGTCTAAAAAGATGTGGAAAAAGTTGCAGGCTGAGATGGTTAAACTATCTTAGACCCAATATCAAGAGGGGAAACATAACAATTGAAGAAGAAGACTTGATTCTTAGGCTTCACAAACTTCTAGGAAACAGATGGTCTCTGATAGCTGGGAGGCTTCCAGGGCGAACAGATAATGAAATAAAGAACCATTGGAATTCTCATTTGTGCAAAAAAGTCCATCCCAATGCAGGGGAACCATCAACTTCAACAGCAAAAGAAAGTGGTGCCACACTCAATAATAACCCTAATAATATGGAGGACAGTGAAATAATGTTAGAGCATAATGGAGCCATTAATAATGGGAGTGACGAAAATTTAGATATTAGCTTCGATGTGAACGAATTTTTTAATTTCTCTACTGAAGGATCCTTTGGTTTTGATTGGGTAAACAAGTACTTAGAAGTTAGAATTTGA 600 0.3783 MAPKNNKKSTKISSVMMNRGAWTPEEDDKLARFIEIHGAKRWKTLAVKSGLKRCGKSCRLRWLNYLRPNIKRGNITIEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNHWNSHLCKKVHPNAGEPSTSTAKESGATLNNNPNNMEDSEIMLEHNGAINNGSDENLDISFDVNEFFNFSTEGSFGFDWVNKYLEVRI* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1737 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 66 IPR017930 -
Amo01g1737 199 CDD SANT 78 117 IPR001005 -
Amo01g1737 199 SMART sant 71 119 IPR001005 -
Amo01g1737 199 SMART sant 18 68 IPR001005 -
Amo01g1737 199 Gene3D - 76 147 - -
Amo01g1737 199 Pfam Myb-like DNA-binding domain 72 117 IPR001005 -
Amo01g1737 199 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Amo01g1737 199 Gene3D - 11 72 - -
Amo01g1737 199 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Amo01g1737 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Amo01g1737 199 SUPERFAMILY Homeodomain-like 18 113 IPR009057 -
Amo01g1737 199 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 197 - -
Amo01g1737 199 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 7 197 - -
Amo01g1737 199 MobiDBLite consensus disorder prediction 122 146 - -
Amo01g1737 199 CDD SANT 21 66 IPR001005 -
Amo01g1737 199 MobiDBLite consensus disorder prediction 125 146 - -
Amo01g1737 199 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1737 Amo-Chr1 40951600 40953160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1737 6 130 MYB Transcription Factor Family AT3G13540 63.492 5.09e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo01g1737 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1737 K09422 - gmx:100799575 268.085