Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1718 ATGCGTATAGAAGAATTGAAGTGTGGTGGTGAGGTGGAAGGAAATGGAGAGGAAGAGAGGTCATCAAGCTTTGGGGGCTATGATGCAAAGAAGGTTTTGGTTGGAGCGGGGGCTCGCGCGCTTTTCTATCCCACGCTGCTTTACAATGTTGTAAGGAACAAGATTCAGGCCGAATTTCGATGGTGGGATAAGGTTGACGAGTTCATATTATTAGGTGCTGTTCCATTTCCAATTGATGTTCCCCGTCTGAAGGAGCTTGGTGTTCGTGGGGTTGTCACATTGAATGAGTCATATGAGACTTTGGTTCCAACCACATTATATTATGCTCATGGAATTGACCATCTAGTGATTCCTACTAGAGATTACTGTTTTGCTCCATCGTTGCATGATATATGCCGTGCTGTGGACTTCATACATGAAAATGCATTATCTGGACACACTACATATGTCCACTGCAAAGCTGGGCGTGGTCGCAGCACAACTGTTGTTATTTGTTATCTGGTGCACCACAAACTAATGACCCCGGAGGGTGCATATGATTATGTGAAGTCAATTCGGCCAAGGGTGCTTTTGGCTTCATCTCAGTGGCAAGCTGTTCAGGATTACTACCGCTACCTCATCGGGAGAAGATTTGTTGCACATGCACCTTTCGCAGATCTATTTGTAAAGACTAAGGCTTCCGAGGCTGCAATAGCTTCAAGAAATCATATGATGTTTGACGATAATTCTGTAGTTGTGATAACTGAGTCAGATCTTGAAGGATATGATCCAAGCATTCAATTGCAAACTATGCCTGGTGAAATTTGGGCAGATTTAAGTGTGGTTTACCGTGTAGGGGTTGCTGGACGGGCAGCACTGGCAAGAATCTCATGCCTTTGGCTGCAGTGTGGTCCTAACCAGAAGATTTCTGCGGAGAAACTTACCAGTGATGACAGTTGCTCAATCCGGAGTAATAGTAATAATTTGGGAGGAATTAGTATCAATATCCATGTGTATTGA 999 0.4414 MRIEELKCGGEVEGNGEEERSSSFGGYDAKKVLVGAGARALFYPTLLYNVVRNKIQAEFRWWDKVDEFILLGAVPFPIDVPRLKELGVRGVVTLNESYETLVPTTLYYAHGIDHLVIPTRDYCFAPSLHDICRAVDFIHENALSGHTTYVHCKAGRGRSTTVVICYLVHHKLMTPEGAYDYVKSIRPRVLLASSQWQAVQDYYRYLIGRRFVAHAPFADLFVKTKASEAAIASRNHMMFDDNSVVVITESDLEGYDPSIQLQTMPGEIWADLSVVYRVGVAGRAALARISCLWLQCGPNQKISAEKLTSDDSCSIRSNSNNLGGISINIHVY* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1718 332 Pfam Dual specificity phosphatase, catalytic domain 101 203 IPR000340 GO:0008138|GO:0016311
Amo01g1718 332 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 207 IPR029021 -
Amo01g1718 332 Gene3D Protein tyrosine phosphatase superfamily 61 209 IPR029021 -
Amo01g1718 332 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 197 IPR000387 GO:0016311|GO:0016791
Amo01g1718 332 SMART ptp_7 103 208 IPR003595 -
Amo01g1718 332 PANTHER - 1 332 - -
Amo01g1718 332 SMART dsp_5 64 205 IPR020422 GO:0006470|GO:0008138
Amo01g1718 332 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 1 332 - -
Amo01g1718 332 ProSiteProfiles Dual specificity protein phosphatase domain profile. 61 208 IPR020422 GO:0006470|GO:0008138
Amo01g1718 332 ProSitePatterns Tyrosine specific protein phosphatases active site. 150 160 IPR016130 GO:0016311|GO:0016791
Amo01g1718 332 CDD PTPMT1 61 204 IPR044596 GO:0004721
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1718 Amo-Chr1 40093559 40097110 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1718 30 332 Protein tyrosine phosphatase (PTP) family AT2G35680 59.744 6.77e-125 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1718 - - adu:107485250 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1718 01 40093559 40097110 Amo11g1247 11 42648090 42651309 hybridization