Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1677 ATGTGTACTGGTGGTCCACATCATCAATCCAATCCTAAAACATATTATTCCTATGGTCCCAATTGGGCTCACACCACTGATATGGAGCTTAAGCACCAACTTGGTCTTCTTTGCGTTATACTGCTTTTACCAGCACTAAGCAGTGCCACTAATAAAGACTACTGCCCTTGGAATCCTTATAAGAACTCTAGAGCAACCTATTATGGTACCCGTGATGGTTATGGGACTCCAATACCAAAATTATGCAATGTCAACGGGGTAACAGTGGTGGCAACAGATTATGGTCAGGGAGACAGAACAGACTTCATATTGAGCCCACGGGCCTTTAATAGTTTGGGTGTGAGCCCTGATGCATCTAAAGAGCTAAAAAAATACGGTACTCTTGATATTGCATACAAAAGAGTCCCTTGCACATACCCTGGCCGCAACATTGTTGTTAAGGTTCAAGAAAGTAGCAGCAACCCTGGATACTTTGCTGTGGTTCTTCAAAACCTTGGTGGATCATACGATGTCACTAATGTTGAATTGTGGGAGGATTCACGCAAACAATGGAGTCCATTGCGTAGGGTTTATGGGGCAGTGTTTGACTATGCTAACCCACCAAAGGGTCAACTCTTCTTGAGGTTCCAAGTGATTGGTTGTTACGGAACTTATTGGCAAATACCAAAGAAACCTATCCCTGCTGATTGGAAGCCCAAAATGACCTATGACACTGGACTTCAGCTTAAATAA 732 0.4317 MCTGGPHHQSNPKTYYSYGPNWAHTTDMELKHQLGLLCVILLLPALSSATNKDYCPWNPYKNSRATYYGTRDGYGTPIPKLCNVNGVTVVATDYGQGDRTDFILSPRAFNSLGVSPDASKELKKYGTLDIAYKRVPCTYPGRNIVVKVQESSSNPGYFAVVLQNLGGSYDVTNVELWEDSRKQWSPLRRVYGAVFDYANPPKGQLFLRFQVIGCYGTYWQIPKKPIPADWKPKMTYDTGLQLK* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1677 243 Pfam Expansin C-terminal domain 144 214 IPR007117 -
Amo01g1677 243 Gene3D - 138 238 IPR036749 -
Amo01g1677 243 SUPERFAMILY PHL pollen allergen 142 237 IPR036749 -
Amo01g1677 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 238 IPR007117 -
Amo01g1677 243 Gene3D - 76 137 IPR036908 -
Amo01g1677 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 79 142 IPR007112 -
Amo01g1677 243 PANTHER EXPANSIN-B1-LIKE PROTEIN 29 76 - -
Amo01g1677 243 PANTHER EXPANSIN-B1-LIKE PROTEIN 78 242 - -
Amo01g1677 243 SUPERFAMILY Barwin-like endoglucanases 54 141 IPR036908 -
Amo01g1677 243 PANTHER EXPANSIN-B3 29 76 - -
Amo01g1677 243 PANTHER EXPANSIN-B3 78 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1677 Amo-Chr1 38796956 38799352 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1677 28 242 Expansin Gene Family AT4G17030 38.372 1.47e-50 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1677 - - adu:107485050 480.33