Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1650 ATGGTGGATAAGCGGCACAAAGTTCCTGCCGTCCGTGATTTTCCGAAAGGGTGTGGCTCAAACCCTTCAAGAACCGCACACGGTGATGCTGCAAAGGTTGTCCCTGGGAACCAGTATAAACGGGTTCCGGCTTTTAGAGACTTTCCTCCTTTGTGTGGACCAGATGCTTCTTCACATCTTAGTGAAGGTGAGGGTGAAACAGCAATTGATGCAGAAGAACAGGTGGAAAAGAATGTTCATTGTGATGGTGGAAAGGTACTGGATCTAGTTCAAGGTGATTCTGGTGGGAATGGTGTAGAAAAAGAGGAGGAGCTTGATGTAATTCGAACATGTGTTACGGTTCCTAAGGATGGCAACCGGGATAAGGTTGAAATGAATTCTTATAATTTGAAGGTTTCATCTCGCAGGGTGGTGCTAGCACTGATGTCTGAATCTGAATGTCCTTGGAGGAATGCTGCAAGAAAAAAGGGAAAGAAAGTCGGTTTTCGGTTGCATGTTGACATGTCTAATGCGAATACCAGGACTAGATTCTCGTTGAATCGGTCAAAGAAGCCTTTAAAGAAGAAAACGGGGAATGATAATTCTGAAAACATTGATGAATTTCAAGTTGTCAACAAATCACATGGTTCCAAGGTAAAGAATCCGGCCTTTGATCAACATGATTTGATTGATTTCAATGGTCATCAGGACAATGATTCAAGTGTGACTAGAAATAAGGTAAGGGAAACATTGCGCCTTTTTCAGGCGGTTTATAGAAAGCTTGTACACGAAGAAGAAGCGAAGCTAGAAGGTAAGGCAAGTAGCTTTAGGAGTGTTGATTTACGAGCAGCTGAGATCCTTATGGGCAAAGGGAAATATCTTAACACCAACAGGATATTGGGATCTGTCCCTGGGGTCGAAGTTGGCGACGAATTTCAGTATAGGGTAGAGCTTGCCATGGTTGGCCTACATCAGCGGATTCAAAGCGACATAGATTATGTTAAGCATAATGGGAAGACCCTCGCCATGAGTGTTATCACATTGGGAGGCTATGAGGACGAGTTAGATGATTCAAATGTCTTGATATACACAAGTTTGGTTGGAAATAATACTGATAAAGAAGTCGAAGATCAGAAGCTTGAGCAGTGCAACCGTGCTTTAAGGAACAGCATTGAGGAAAAGAATCCTGTTAGGGTGATAAGGGCCACTGAATCAATGCACGGAAAGGATAAGAAATATGTCTATGATGGACAATATGTGGTTGAGAATTGTTGGCAGGATGAGGGGCTGCACGGTTCGCCGGTTCTTAGATATCGGCTGCAAAGGATCCCAGATCAACCGGAGCCTTCTTGGAAAGAAGTAAAGAAATCTGAAAATTTGAGAGATAGAGAAGGTCTATTTGTTCATGACATTTCAAATGGGAAAGAGCTAATTCCAATTCATGCTCTCAACACCATAGATGACCAAAATGTTCCATCATTTGTGTATGTTACAAGAATGATATATCCAAATTGGTGCAATCCTATTCCTCGGAAAGGCTGTAATTGTGTTGGAACATGTTCAGAATCAGAGAAATGTCCTTGTGCTGCGAAAAATGGTGGTGATATCCCATTCAACCATGATGGGGCCATTGTAGAAGCAAAGCCTCTAATCTATGAGTGTGGACTTTCTTGCAAGTGCCCTTCAACATGCCACAATAGAGTTAGCCAACATGGCGTGAAGTTCCAACTTGAAGTCTTCAAAACCGATTCAAGAGGTTGGGGTGTGAGATCATTGAATTCAATCCCTTCAGGGAGTTTTATCTGTGAGTATATGGGGGAGCTTCTTGGAGAGGATGAAGCTGAAGAAAGAGTTGACAATGATGAGTATCTTTTCGATATCGGCAATAATAACCAAAAGAGCCATGCCCTTTGGGATGAACTCTCAGTGGTTATGCCTGATGCACACTCAAATTCTTCTTGTGAAGTTGTGGAGGATGGTGGATTCACCATTGATGCTGCACACTATGGTAATGTTGGAAGATTCATCAACCATAGTTGCTCACCTAATCTGTATGCACAGAGTGTGCTTTATGATCATGATGATAAGAGGATTCCCCACATAATGCTGTTTGCGACTGAAAATATTCCACCATTGCAAGAGTTGACTTATGATTACAATTACAAGATAGATGAGGTTTTTGACTCTCATGGGAACATCAAGAGGAAGAATTGCTATTGTGGTTCCATGGAATGCACTGGTAGGATGTATTGA 2232 0.422 MVDKRHKVPAVRDFPKGCGSNPSRTAHGDAAKVVPGNQYKRVPAFRDFPPLCGPDASSHLSEGEGETAIDAEEQVEKNVHCDGGKVLDLVQGDSGGNGVEKEEELDVIRTCVTVPKDGNRDKVEMNSYNLKVSSRRVVLALMSESECPWRNAARKKGKKVGFRLHVDMSNANTRTRFSLNRSKKPLKKKTGNDNSENIDEFQVVNKSHGSKVKNPAFDQHDLIDFNGHQDNDSSVTRNKVRETLRLFQAVYRKLVHEEEAKLEGKASSFRSVDLRAAEILMGKGKYLNTNRILGSVPGVEVGDEFQYRVELAMVGLHQRIQSDIDYVKHNGKTLAMSVITLGGYEDELDDSNVLIYTSLVGNNTDKEVEDQKLEQCNRALRNSIEEKNPVRVIRATESMHGKDKKYVYDGQYVVENCWQDEGLHGSPVLRYRLQRIPDQPEPSWKEVKKSENLRDREGLFVHDISNGKELIPIHALNTIDDQNVPSFVYVTRMIYPNWCNPIPRKGCNCVGTCSESEKCPCAAKNGGDIPFNHDGAIVEAKPLIYECGLSCKCPSTCHNRVSQHGVKFQLEVFKTDSRGWGVRSLNSIPSGSFICEYMGELLGEDEAEERVDNDEYLFDIGNNNQKSHALWDELSVVMPDAHSNSSCEVVEDGGFTIDAAHYGNVGRFINHSCSPNLYAQSVLYDHDDKRIPHIMLFATENIPPLQELTYDYNYKIDEVFDSHGNIKRKNCYCGSMECTGRMY* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1650 743 Pfam Pre-SET motif 464 560 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo01g1650 743 MobiDBLite consensus disorder prediction 1 30 - -
Amo01g1650 743 ProSiteProfiles Post-SET domain profile. 727 743 IPR003616 -
Amo01g1650 743 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 154 743 IPR025794 GO:0016571
Amo01g1650 743 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 231 742 - -
Amo01g1650 743 SUPERFAMILY PUA domain-like 276 450 IPR015947 -
Amo01g1650 743 Pfam SET domain 579 713 IPR001214 GO:0005515
Amo01g1650 743 ProSiteProfiles SET domain profile. 568 713 IPR001214 GO:0005515
Amo01g1650 743 SMART preset_2 461 552 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo01g1650 743 Gene3D SET domain 456 743 IPR046341 -
Amo01g1650 743 Gene3D - 276 455 IPR036987 -
Amo01g1650 743 ProSiteProfiles Pre-SET domain profile. 505 565 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo01g1650 743 SMART G9a_1 289 439 IPR003105 -
Amo01g1650 743 Pfam SAD/SRA domain 293 439 IPR003105 -
Amo01g1650 743 SUPERFAMILY SET domain 455 720 IPR046341 -
Amo01g1650 743 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 231 742 - -
Amo01g1650 743 SMART set_7 568 719 IPR001214 GO:0005515
Amo01g1650 743 ProSiteProfiles YDG domain profile. 294 435 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1650 Amo-Chr1 37547302 37550355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1650 237 740 Su(var)3-9 homologs AT5G04940 38.491 2.32e-110 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo01g1650 SAD_SRA 3.5e-43 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1650 K11420 - adu:107484449 1530.77