LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g1609	ATGAAGGTCATCGCCGCCTACCTCCTCGCCGTCCTCGGTGGCAATGCCGCTCCTTCCGCCGCCGATCTCAAGGGCATTCTCAGCTCCGTTGGAGCTGAAGCAGATGATGACAGCATAACGCTCCTTTTATCTGAAGTTAAAGGCAAAGACATAACAGAGGTTATTGCCGCCGGAAGGGAAAAGCTTGCGTCGGTGCCTGCTGGTGGTGGTGGTGCTGTTGCCGTTGCCGCTGCTCCTAGCGGTGGTGCTGCTGCTCCCGCAGCCGCCGAGGCAAAGAAGGAGGAGAAGGTCGAAGAGAAGGAGGAATCAGATGATGATATGGGATTCAGTCTCTTTGATTAA	342	0.5556	MKVIAAYLLAVLGGNAAPSAADLKGILSSVGAEADDDSITLLLSEVKGKDITEVIAAGREKLASVPAGGGGAVAVAAAPSGGAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD*	114

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g1609	113	Pfam	60s Acidic ribosomal protein	18	112	-	-
	Amo01g1609	113	PANTHER	60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE	2	113	-	-
	Amo01g1609	113	PRINTS	Ribosomal protein P2 signature	21	32	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Amo01g1609	113	PRINTS	Ribosomal protein P2 signature	76	90	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Amo01g1609	113	MobiDBLite	consensus disorder prediction	84	113	-	-
	Amo01g1609	113	CDD	Ribosomal_P2	1	113	IPR044076	GO:0002182\|GO:0003735\|GO:0022625
	Amo01g1609	113	Hamap	50S ribosomal protein L12 [rpl12].	2	113	IPR027534	GO:0003735\|GO:0005840\|GO:0006414
	Amo01g1609	113	PANTHER	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	2	113	IPR044076	GO:0002182\|GO:0003735\|GO:0022625
	Amo01g1609	113	Gene3D	-	1	59	IPR038716	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g1609	Amo-Chr1	35150022	35151078	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g1609	1	113	Cytoplasmic Ribosomal Protein Gene Family	AT3G44590	69.027	2.15e-31	105

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g1609	K02943		-	ini:109157798	127.102