Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1583 ATGAAACCCGATGCTCTTCAGGCTGGGATAAGTGCTAGTGATGCTGCAAGGACACTTGGAGTTACCCCAGCAATGGCGAAGGAGCATCTTTTGTCTACTGAGAGCAAGGGAGGCCAGGCAAATGGCACATCCAGCCAATTTGAAGCGGATTCTACAAACACAACTATATTTGTTGGAGGACTCAAACCTAATGTTACAGATGAAGATCTTAGGCAGCAATTCTCTCAGTATGGTGAGATAGTATCTGTTAAGATACCTATTGGAAAGGGGTGTGGTTTTGTCCAATTTGCAATCAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAATGATTGACAAGTAA 351 0.433 MKPDALQAGISASDAARTLGVTPAMAKEHLLSTESKGGQANGTSSQFEADSTNTTIFVGGLKPNVTDEDLRQQFSQYGEIVSVKIPIGKGCGFVQFAIRNNAEEALQKLNGTMIDK* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1583 116 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 116 IPR000504 GO:0003723
Amo01g1583 116 Gene3D - 36 116 IPR012677 -
Amo01g1583 116 SMART rrm1_1 55 115 IPR000504 GO:0003723
Amo01g1583 116 Gene3D - 4 35 IPR036388 -
Amo01g1583 116 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 22 116 - -
Amo01g1583 116 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 115 IPR000504 GO:0003723
Amo01g1583 116 SUPERFAMILY RNA-binding domain, RBD 48 115 IPR035979 GO:0003676
Amo01g1583 116 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 22 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1583 Amo-Chr1 34257871 34260215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1583 53 115 Eukaryotic Initiation Factors Gene Family AT4G34110 39.706 1.69e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1583 - - ahf:112801658 229.565