Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1544 ATGGCTGTCTCACTTTTGGGTCCTCTGGTTATTACCACCTTGCTTTGCATGCAAACTCTGGCAGATGCTTCATGCACTGATTGTTTTGTTCAATCTCGAGCAGAATATTACCCGAACTCTGAAGTAAATGGCACAGATGCTGGTGCATGCGGATTCGGTTCCTTTGGTGCTACCATTAATGGTGGCGATGTATCAGCTGCATCCAATCTTTACCGTAATGGTGTTGGCTGTGGCTCCTGTTACCAGGTAAGGTGTACAAACAATACCTATTGCTCAGACAATGGTGTCACTGTAGTTATAACTGACCAAGGCTCAGGTGATGGCACCAACTTCATTCTGAGTCAACGAGCCTTTGGTGGGATGGCTCAGACCAGTGACACAGCTCCTTATCTATTAGCTCTTGGCATAGTTGATATTGAATACAGGCGGTATGATATAATTCTACACAGATAA 453 0.4481 MAVSLLGPLVITTLLCMQTLADASCTDCFVQSRAEYYPNSEVNGTDAGACGFGSFGATINGGDVSAASNLYRNGVGCGSCYQVRCTNNTYCSDNGVTVVITDQGSGDGTNFILSQRAFGGMAQTSDTAPYLLALGIVDIEYRRYDIILHR* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1544 150 PANTHER EXPANSIN-B3 10 144 - -
Amo01g1544 150 PANTHER EXPANSIN-LIKE B1 10 144 - -
Amo01g1544 150 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 143 IPR007112 -
Amo01g1544 150 SUPERFAMILY Barwin-like endoglucanases 17 144 IPR036908 -
Amo01g1544 150 Pfam Lytic transglycolase 67 141 IPR009009 -
Amo01g1544 150 Gene3D - 16 145 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1544 Amo-Chr1 32489087 32490391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1544 9 143 Expansin Gene Family AT4G17030 47.059 2.30e-35 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1544 - - lja:Lj4g3v1176640.1 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0450 05 5290481 5292763 Amo01g1544 01 32489087 32490391 PCT
Amo01g1544 01 32489087 32490391 Amo05g0450 05 5290481 5292763 PCT