Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1506 ATGGGAGGGGCATCACTGCCACCTGGATTTCGTTTCCACCCAACGGATGAAGAATTATTGGGATATTACCTAAAAAGAAAAGTGGAAGGGCTTGAAATTGAGCTTGAGGTTATTCCTGTGATTGATTTGTGCAAGTTTGATCCTTGGGAATTGCCCGAGAAATCATTGTTGGCAAACAGAGACATGGAATGGTTCTTCTTTTGTCCAAGGGACCGCAAGTACCCAAATGGATCAAGAACTAACAGAGCCACCAAAGCTGGTTATTGGAAAGCCACTGGAAAAGACAAGAAAGTTGTGTGCCAATTTGATACTCCTTCCACTGTCACAGGATATAGAAAAACCCTTGTCTTCTACCGTGGCAGAGCCCCTTTAGGTGACAGAACTGATTGGCTCATGCATGAGTATCACCTCGCCGATGATCTCGGCCTAGCATCTACATGTTTTCAGGTGAACAATGGGAATGATGCGTCAATGAGATTCTCCAATGAGCCCTTCTCCATTTCTGCTGATGCTTCATCTTCTCAACCAAGTTATTTGAACAGTGAGAGTGTTTACTCAAGCCCCAATGCTTCTTCACACAATGTGGCTCCAATGGCAGACTCTAACCAAGCTTCTATAAACACCAGTTCTTCATCAGAATTTTGGGTGTCCCCTGATCTGATTCTTGATTCTTCAAAGGACTACCCGCAACTAGAAAATACTTTTACAAGGTGTGACATACCAAGTAGTACAATGACACCATGCCTCTCATTGGATCAACCTGAAATTTCACCTTGTTCATCATACTCAAATTTTAATGGGCAACTTGGATTTTCCGATGATTTCAATATGATTGGCGGCATGTCACCTTACTCAATACAAGAAGATTTTACGTACTTTCATGGAAATGATGGGGATGTTTCTTATGGAAGTTATGATCATATTAATTCAGTTGAGTACCCTGAATACTTCTGA 954 0.4182 MGGASLPPGFRFHPTDEELLGYYLKRKVEGLEIELEVIPVIDLCKFDPWELPEKSLLANRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDKKVVCQFDTPSTVTGYRKTLVFYRGRAPLGDRTDWLMHEYHLADDLGLASTCFQVNNGNDASMRFSNEPFSISADASSSQPSYLNSESVYSSPNASSHNVAPMADSNQASINTSSSSEFWVSPDLILDSSKDYPQLENTFTRCDIPSSTMTPCLSLDQPEISPCSSYSNFNGQLGFSDDFNMIGGMSPYSIQEDFTYFHGNDGDVSYGSYDHINSVEYPEYF* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1506 317 Gene3D NAC domain 15 173 IPR036093 GO:0003677|GO:0006355
Amo01g1506 317 ProSiteProfiles NAC domain profile. 6 152 IPR003441 GO:0003677|GO:0006355
Amo01g1506 317 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 151 317 - -
Amo01g1506 317 SUPERFAMILY NAC domain 4 142 IPR036093 GO:0003677|GO:0006355
Amo01g1506 317 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 151 317 - -
Amo01g1506 317 Pfam No apical meristem (NAM) protein 7 137 IPR003441 GO:0003677|GO:0006355
Amo01g1506 317 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 146 - -
Amo01g1506 317 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1506 Amo-Chr1 31233725 31235946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1506 1 238 NAC Transcription Factor Family AT4G17980 58.921 2.59e-91 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo01g1506 NAM 3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1506 - - aip:107605232 500.745