Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1500 ATGGGAAGTGGAGTCTCTACCTTGTGTTCCTGCCTCGAACCGGCGCCGAACCAACCGGACCTCGACAACGACGTGATCTTCGCCGCCACCGAACCGCTTGACGAAACTCTCGGCCATTCCTTCTGCTATGTCAGATCCTCCAACCGATTCCTCTCGCCAACACACTCCGATCGCTTCGTTTCCCCCTCTGCCTCACTCCGTTTCTCTCCAACTCACGACCCGATCCACAGAACCCGGCCCGACCCACCCGAAACTGCTTTCAAGGCCATTTCGGGAGCCTCCGTTAGTGCCAACAGCTCCGTTCCCAAGACAGTTATTCAGTTAGAAGAAGAGGCCACCGACTGTTCCGGTAACAGAGCAGCTGGATTAGGAGGAGGGACCGTTGTCAACGGTTTCGAGAGTACGTCGTCCTTTAGCGCGCTACCGCTCCAGCCGGTTCCTCGCAGTGGAGAGCCTTCTGGAACATTCGAGAGGGGAGGAGGGTTCTTCCTCTCGGGACCAATCGAGAGCGGTGCGCTCTCCGGGCCGCTTAATTCCGGCGCCGCCACCGCCGCCGGAGTCCCGTTCTCGGCCCCGCTGGGAGGGGTGTACGTGAGGAAAAAGAGGAAGAATGGCGTGTCCGGATTCAGGAAGGCGTTTCAGAGGGGTGTGCCAGAGAAGAAGCGGCCGTGGGTGGTGCCGGTGCTGAACTTCGTCGGGAGGAAGGAAGTTCAGGCTTGCGAGGGAAAGCCGGCGACGGTAGGGGCGGATGACGTGGCGAGAGAGGAGAGCAATGTGCAGTGGGCGCTGGGGAAGGCTGGCGAGGACAGGGTGCACGTGGTGGTGTCGGAGGAGCAAGGTTGGTTGTTCGTTGGGATTTACGACGGTTTCAACGGCCCCGACGCGCCGGAGTTCCTGATGGGACATCTCTACCGTGCCGTCCACAACGAACTTCAGGGTCTGTTCTGGGAAGCTGAAGAAGCAGAGGGCAGAAAGGACAATATTCCCGCTGCTGAAGTTGCTGCTGAGGTGAAAAACAGTGAGGGAGATGCCATTGAAGACTCGATCTCTCACTCGGCGACTGCGGCTGTTAAGAAGGTAACGTTTCAGGTGGAGGGAACGGAAAGCAGGAGGCGTAGGCTGTGGGAATTTCTTGCTGAGGACCCTGAAGACGGCCTTGACCTTTCTGGTTCCGATAGGTTTGCGTTTTCCGTGGATGATGCTCTCAGTGTTAACAATGCCAATGCTGGCTCCGCTGTTAGCAGAAGGTGGCTGCTGTTGTCGAAATTGAAGCATGGGTTGTCCAAGCATAAAGAGGGTCAAGGTAGGAGGCTGCTGCCGTGGAGCTTTGGTGCGGAAGGGAAGGATGAGAAGGTGGAAACAGAGGCAGAGAACCCAGCTGAGGAGAAGTTTTCTTCCGGTGGAGGCCGCAGTGGTGGGAGGAGGAGGAAGGTTGGCCCGGTGGACCATGATCTTGTTTTGAGGGCATTATCTCGTGCGCTCGAGGTGACCGAGCTGGCATATTTGGATATGACTGATAAGCTTCTGGATACGAATCCAGAACTTGCTTTGATGGGTTCGTGTTTGTTGGTTTCTCTGATGAGGGATGAGGATGTGTATGTGATGAACGTTGGGGATAGCCGCGCTATTGTTGCTCATTATGAGCCCAAAGAGGGCGCTGCTGCTTGTACAGGATCCAGATTCAAGAGCACGGAGAGTATTGTTGAGGAGTCCTCGGCAGGTGAAAGCACAGGCAATTTGGGGAACGAGGATCCTGCTCCGGAAATGAGGTTGGCAGCATTGCAGCTGTCAACTGACCACAGCACCTGCATTAAAGAAGAAGTCAATAGAATTAAAAATGAGCACCCTGATGATGCGCAATGCATAGTCAATGATAGAGTAAAAGGTCGTCTCAAGGTCACCAGAGCATTTGGGGCAGGATTTTTGAAACAGCCAAAGCTGAATGATGCGGTGTTAGAAATGTTTCGGAACGAGTATATTGGCACTGCTCCATATATATCCTGCTCTCCTTCGCTACGTCACCATAGATTATGCCCTAGAGATCAGTTCTTGATTCTCTCATCTGATGGGTTATATCAATATCTAAACAATGAAGAAGTTGTTTCTCAAGTGGAGAGCTTCATGGAAAAGTTTCCAGAAGGAGATCCTGCTCAACATTTAATTGAAGAGCTGCTTCTCCGTGCAGCAAAGAAGGCTGGCATGGGTTTTCATGAGTTGCTTGATATCCCACATGGAGATAGGAGGAAATACCATGATGATGTCACTGTCATGGTGATATCACTTGAAGGAAGAATCTGGAAATCCTCTGGGAGGTATCTGTGA 2322 0.5323 MGSGVSTLCSCLEPAPNQPDLDNDVIFAATEPLDETLGHSFCYVRSSNRFLSPTHSDRFVSPSASLRFSPTHDPIHRTRPDPPETAFKAISGASVSANSSVPKTVIQLEEEATDCSGNRAAGLGGGTVVNGFESTSSFSALPLQPVPRSGEPSGTFERGGGFFLSGPIESGALSGPLNSGAATAAGVPFSAPLGGVYVRKKRKNGVSGFRKAFQRGVPEKKRPWVVPVLNFVGRKEVQACEGKPATVGADDVAREESNVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGHLYRAVHNELQGLFWEAEEAEGRKDNIPAAEVAAEVKNSEGDAIEDSISHSATAAVKKVTFQVEGTESRRRRLWEFLAEDPEDGLDLSGSDRFAFSVDDALSVNNANAGSAVSRRWLLLSKLKHGLSKHKEGQGRRLLPWSFGAEGKDEKVETEAENPAEEKFSSGGGRSGGRRRKVGPVDHDLVLRALSRALEVTELAYLDMTDKLLDTNPELALMGSCLLVSLMRDEDVYVMNVGDSRAIVAHYEPKEGAAACTGSRFKSTESIVEESSAGESTGNLGNEDPAPEMRLAALQLSTDHSTCIKEEVNRIKNEHPDDAQCIVNDRVKGRLKVTRAFGAGFLKQPKLNDAVLEMFRNEYIGTAPYISCSPSLRHHRLCPRDQFLILSSDGLYQYLNNEEVVSQVESFMEKFPEGDPAQHLIEELLLRAAKKAGMGFHELLDIPHGDRRKYHDDVTVMVISLEGRIWKSSGRYL* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1500 773 Gene3D - 237 768 IPR036457 -
Amo01g1500 773 PANTHER PROTEIN PHOSPHATASE 2C 29 18 771 - -
Amo01g1500 773 ProSiteProfiles PPM-type phosphatase domain profile. 251 761 IPR001932 -
Amo01g1500 773 PANTHER PROTEIN PHOSPHATASE 2C 18 771 IPR015655 GO:0004722|GO:0006470
Amo01g1500 773 SMART PP2C_4 252 759 IPR001932 -
Amo01g1500 773 Pfam Protein phosphatase 2C 493 725 IPR001932 -
Amo01g1500 773 SUPERFAMILY PP2C-like 265 762 IPR036457 -
Amo01g1500 773 CDD PP2Cc 482 761 IPR001932 -
Amo01g1500 773 MobiDBLite consensus disorder prediction 448 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1500 Amo-Chr1 30942228 30947545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1500 1 773 PP2C-type Phosphatase Gene Family AT2G35350 55.650 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1500 - - mtr:MTR_4g098650 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1500 01 30942228 30947545 Amo11g1077 11 32110504 32115822 hybridization
Amo05g0472 05 5505872 5510281 Amo01g1500 01 30942228 30947545 PCT
Amo01g1500 01 30942228 30947545 Amo05g0472 05 5505872 5510281 PCT