Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo01g1494 | ATGGGTTGCACTGTGAGGGAAAAGCACATCAGAGCGAATCGGAGGCCCCGATCATCATCGAAACCCGATTCTGATTCGTGCGACAGAGACCCGATTTCCAAATCCATAGCTGAGTCTGGCCTCAAGCCCTTCAGGTACCATCACCATGTGCCTCCCAACAACAACAACAACAACGAACCTTCTTCTACCCAGAACACGAACCCTAACTCCGATGAAACGGGTTGGGGTTACTGCACGGAGGAACAGTTGGAGGAGATCCTCTTGAAGAACCTCGAATTCATTTACAACGAAGCGGTTTCCAAGCTCGTCGCTTTGGGTTACGATGAGGACGTTGCGGTCAAAGCTATTTTGAAAAACGGCCATTGCTACGGTGGAATGGATGTTCTCACCAACATACTACATAATTCGTTAGCCTACTTGAATAATAATAATAGCAATAATAATAATAATAGTGCTGGAAATGGTGGGAATTTGGACGAGAGTGAGGCTGCTTTCTCTGATTTGAGGCACTTGGAGGAGTATTCTCTTGCTGGTATGGTGTGTTTGTTGCAACAGGTGAGGCCTCATTTGAGCAAAGGTGATGCAATGTGGTGTTTGCTAATGAGTGATCTTCATGTTGGTAGGGCCAGCACTATGGAGATTCCGGTCCCGGGAAGTGGGTACCCGAGTACTGCCACTGTGGCTGCCACGGTTGAAGGTGGTGGTAATTCGGTGGTAGTTGGTGATGGTGGTGGCAATTCGGCGGTTGGTGGTGGTGGTGTTATGGCTCCTGCATTGTGTAGGTTTCATGGTGGTTGGGGATTTGGGAATGGGGCAGGCTCAGGGTTTCAGGCGAATGGGTTGTTCTCTTATGGTGCTGCTGAGATGAATTTGCATCTGCAAAGGGATATTGAGTTCCCTAAGAGGTTTAATCTTTCGCCTTCCATGAAATCATTGTTGAAGAGGAATGTGGCTGCGTTTGCTGCTGGTTTTAGGGCGAATTCGAAGCAATTGCAGACTCAGGCTCAGGTGAAGGCCTTTTCTGGTAGTGCTTCTGTGTCGAAGTTGGATTCTCCGGCTGTGAATGGGGCTGAAGCACTGGTTGAGCAGCCTGGACAGGTGGGAGAATCTCAGAATGTTGATAGCCAAGATGCTGTGAATTCAGTGCTGAGTAAGTTTCGTGATCTTAATCTTGATGAGAATTTGGAGCTTGTGGCAGAGGATCAGAAGGATGAGGTGATAGTCACTTTGTTTCATCAGATCAAGGATCTTGAGAAACAGGTCAAGGAGCGAAAAGATTGGGCTCATCAGAAGGCAATGCAAGCTGCGAGAAAGCTAAGCAGTGATCTTACTGAGCTCAAGATGTTGAGGATGGAAAGAGAGGAGACTCAGAGATTGAAGAAAGGGAAACAGGCACTCGAGGACACCACCATGAAGAGGCTCTCAGAGATGGAAAATGCTTTGAGAAAGGCTAGTGGTCAAGTGGACCGTGCGAATGCAGCCGTGAGGAGACTAGAGACAGAGAATGCAGAAATTAAAGCAGAGATGGAGGCTTCCAAGTTAAGTGCATCAGAGTCCGTGACAGCTTGCTTAGAGGTTGCAAAAAGGGAGAAAAAATGCTTAAAGAAGCTTCTTGCTTGGGAGAAACAGAAAGCTAAGCTGCAGCAGGAGATTGCTGATGAAAAAGCAAAGATATCGGAGACACAAGAAGTCTTGGCTCAGATTAGACAGCGCCAAAAAGACGCGGAGGTTAAGTGGAAAGAAGAGGTGAAGGCTAAAGAGGAAGCTTCAGCACTAATCGAAGAGGAGCGCCACTCTAAGGAAGCAGCTGAATCTAATAATAAGAGGAAACTCGAGGCTCTACGTCTGAAGATTGAGATAGATTTCCAGCGCCACAAGGACGATCTACTGCGACTTGAGCAAGAGCTCTCACGGCTTAAAGCGTCTGCACAGTCTGCCGAGCTGCATCATCAGTCAAATGCTGCTTCACCTGTTGGTGGCAACTCTGAGGGCGCAATGCCCCAGAGAGATACAATTGCCAAGCTACTTCAAGAACTAAATAATCTAGAGGATTATTCGGAGAAGGAAGTCAATGGCAACAGAGAATGCATTATATGCATGAAAGATGAAGTTTCCGTTGTTTTCTTGCCGTGTGCACACCAAGTTATGTGTGCCGGTTGCGGCGATGAGTATGGAAGAAAGGGAAAAGCTGCTTGTCCTTGCTGCAGGGTTCCGATCCAACAGCGAATTCGGGTGTTTGGTGCAAGCTCATAG | 2253 | 0.4754 | MGCTVREKHIRANRRPRSSSKPDSDSCDRDPISKSIAESGLKPFRYHHHVPPNNNNNNEPSSTQNTNPNSDETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVKAILKNGHCYGGMDVLTNILHNSLAYLNNNNSNNNNNSAGNGGNLDESEAAFSDLRHLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASTMEIPVPGSGYPSTATVAATVEGGGNSVVVGDGGGNSAVGGGGVMAPALCRFHGGWGFGNGAGSGFQANGLFSYGAAEMNLHLQRDIEFPKRFNLSPSMKSLLKRNVAAFAAGFRANSKQLQTQAQVKAFSGSASVSKLDSPAVNGAEALVEQPGQVGESQNVDSQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVKERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQRLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEIADEKAKISETQEVLAQIRQRQKDAEVKWKEEVKAKEEASALIEEERHSKEAAESNNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHHQSNAASPVGGNSEGAMPQRDTIAKLLQELNNLEDYSEKEVNGNRECIICMKDEVSVVFLPCAHQVMCAGCGDEYGRKGKAACPCCRVPIQQRIRVFGASS* | 751 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo01g1494 | 750 | MobiDBLite | consensus disorder prediction | 16 | 32 | - | - | |
| Amo01g1494 | 750 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 749 | - | - | |
| Amo01g1494 | 750 | Coils | Coil | 474 | 515 | - | - | |
| Amo01g1494 | 750 | MobiDBLite | consensus disorder prediction | 643 | 659 | - | - | |
| Amo01g1494 | 750 | Coils | Coil | 530 | 578 | - | - | |
| Amo01g1494 | 750 | Pfam | Family of unknown function (DUF6592) | 90 | 210 | IPR046527 | - | |
| Amo01g1494 | 750 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
| Amo01g1494 | 750 | ProSiteProfiles | Zinc finger RING-type profile. | 696 | 736 | IPR001841 | - | |
| Amo01g1494 | 750 | MobiDBLite | consensus disorder prediction | 50 | 75 | - | - | |
| Amo01g1494 | 750 | MobiDBLite | consensus disorder prediction | 643 | 666 | - | - | |
| Amo01g1494 | 750 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 680 | 747 | IPR013083 | - | |
| Amo01g1494 | 750 | SMART | ring_2 | 696 | 735 | IPR001841 | - | |
| Amo01g1494 | 750 | SUPERFAMILY | RING/U-box | 695 | 742 | - | - | |
| Amo01g1494 | 750 | PANTHER | OS05G0141500 PROTEIN | 1 | 749 | IPR046934 | - | |
| Amo01g1494 | 750 | Pfam | Zinc finger, C3HC4 type (RING finger) | 693 | 741 | - | - | |
| Amo01g1494 | 750 | Coils | Coil | 622 | 649 | - | - | |
| Amo01g1494 | 750 | Coils | Coil | 586 | 613 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo01g1494 | Amo-Chr1 | 30604133 | 30610606 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo01g1494 | 676 | 746 | C3H Transcription Factor Family | AT1G73950 | 34.667 | 2.29e-07 | 52.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo01g1494 | - | - | adu:107483267 | 1349.34 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Amo01g1494 | 01 | 30604133 | 30610606 | Amo11g1067 | 11 | 31654140 | 31660607 | hybridization | |
| Amo05g0477 | 05 | 5528012 | 5531079 | Amo01g1494 | 01 | 30604133 | 30610606 | PCT | |
| Amo01g1494 | 01 | 30604133 | 30610606 | Amo05g0477 | 05 | 5528012 | 5531079 | PCT |