Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1493 ATGCAGAATCTTTGTTGCCACTTGGAATGTAGCAAGGAAGTCACCTCAAAGTTTCAAGAAATTGTACCTCTTGTTGCTGGTAACATTTTCGGAACAGAAGACAATGGCCCTGCAAGGAAATGGATTGCTCTTGTTAATAAGACCCTTAACAGTCTTCTAGGAACACGTGGACTCAAGAAAGGCCGTTGGACAAATGAGGAGGATCAAATCTTGATCAACTACATTCAAGCCATTGAAGAAGGTTCTTGGAGGGCTTTGCCTAAGAATGTTGGGTTTCTAAGATGTGGCAAGAGTTGCAGATTGAGATGGATTAACTATTTGAGAGCTGATCTCAAAAGAGGAAACATCTCTATTGAAGAGGAAGCCATCATCACTAAGTTGCATGCTTCTTTTGGCAACAGGAATATGATCCCTAGTAACTTTACTATGAATACATCTAATGTGATGGCTAGTTTGGCCACAGATCTGCTAATTATAGGCTATTCGAATACAGATGTTGCTGAATATCTATATAATTCGAAACCTGATGCCGATTCATTATACAAATATCTCTGCAAAGACCTTACTAAAGCATGCAGCACCAAGTCACCCCCTGTCCCTAAGGTAGTGACAATCTGA 618 0.4029 MQNLCCHLECSKEVTSKFQEIVPLVAGNIFGTEDNGPARKWIALVNKTLNSLLGTRGLKKGRWTNEEDQILINYIQAIEEGSWRALPKNVGFLRCGKSCRLRWINYLRADLKRGNISIEEEAIITKLHASFGNRNMIPSNFTMNTSNVMASLATDLLIIGYSNTDVAEYLYNSKPDADSLYKYLCKDLTKACSTKSPPVPKVVTI* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1493 205 CDD SANT 62 107 IPR001005 -
Amo01g1493 205 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 57 139 - -
Amo01g1493 205 Gene3D - 57 113 - -
Amo01g1493 205 SMART sant 59 109 IPR001005 -
Amo01g1493 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 111 IPR017930 -
Amo01g1493 205 Pfam Myb-like DNA-binding domain 60 107 IPR001005 -
Amo01g1493 205 ProSiteProfiles Myb-like domain profile. 55 107 IPR001005 -
Amo01g1493 205 SUPERFAMILY Homeodomain-like 61 134 IPR009057 -
Amo01g1493 205 PANTHER MYB TRANSCRIPTION FACTOR 57 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1493 Amo-Chr1 30565548 30568146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1493 57 201 MYB Transcription Factor Family AT2G47460 49.324 5.56e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo01g1493 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1493 K09422 - jre:108991418 142.895