Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1487 ATGGCTTCAAACTCCAAAACGGAAAACAAGACGAAGAAGAAGAACACCAAAACCGTAACCAAACAAAATTCCAAGACCATCACCAAATCGAAGAACGAGAACAAGAACAAGAACAAGAAGAAGGAGAACGTCTCAGATAATAAGAAGAACAAGAAGAGGGAGAATGAGAATGCGAACAAAAAGACCAACAACAAGAAGAAGAAGCTCACACACAGCAATGGCAACTCGAAGCACCGCGGTGGTGAATCTCTGGTTGATCCTAGCTCCATCTCCGAGTCACAGCAAAAGCGAGAAGTAGAATCAGTTGAACAAGAAGAGGAAGATAGCACTGTAGTCTCCAATGGACGAACCGATGGCAAAAAACCTAAGAAATCGAAGCGTAATCGGGAGGAGGTGGAAGAGGAAGACGAAGGAGACGCGAAATCGCACGTGTTTCCGATGAATCGTATAAGAACAATTGTCAAGGCCGAAGATCCGGATTTGCGCGTTTCTCAGGAAGCGATTTTCGTCGTCAACAAAGCTGCGGAGAAGTTCCTTGAACAATTTGCGCAGGACGGTTATGTTCGGTGTGTCCAAGAGCGTAGGAAGTCTCTGAGCTACAAGCACCTAGCGCATGTTGTGAGTAAGCAGCGGAGATATGAATTTCTTTCTGATTTTGTTCCTGAGACAATGAAAGCTGAGGATGCATTATGA 693 0.4488 MASNSKTENKTKKKNTKTVTKQNSKTITKSKNENKNKNKKKENVSDNKKNKKRENENANKKTNNKKKKLTHSNGNSKHRGGESLVDPSSISESQQKREVESVEQEEEDSTVVSNGRTDGKKPKKSKRNREEVEEEDEGDAKSHVFPMNRIRTIVKAEDPDLRVSQEAIFVVNKAAEKFLEQFAQDGYVRCVQERRKSLSYKHLAHVVSKQRRYEFLSDFVPETMKAEDAL* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1487 230 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 230 - -
Amo01g1487 230 Coils Coil 27 68 - -
Amo01g1487 230 MobiDBLite consensus disorder prediction 96 143 - -
Amo01g1487 230 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED 7 230 - -
Amo01g1487 230 MobiDBLite consensus disorder prediction 1 143 - -
Amo01g1487 230 Gene3D Histone, subunit A 108 222 IPR009072 GO:0046982
Amo01g1487 230 SUPERFAMILY Histone-fold 87 216 IPR009072 GO:0046982
Amo01g1487 230 MobiDBLite consensus disorder prediction 28 63 - -
Amo01g1487 230 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 145 207 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1487 Amo-Chr1 30516470 30519391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1487 113 206 CCAAT-HAP5 Transcription Factor Family AT1G07980 41.667 1.19e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Amo01g1487 CBFD_NFYB_HMF 6.1e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1487 - - adu:107476944 284.263