Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1482 ATGAGTTCTCAGGAAAAGTCTCTGACTTTGGGTGGACATGAACAACAACATGCTGATGCTGATGCTGATGCAGCAGCTTCTTGCAGAAGAACAGTTTCTCTGCCAGCTCAAAAGGTTGYTGATCCAATGGGGATAACCGAAGAAACCATGCATGTTCCTCCAAGGAAGCGACAGAATCTTCTCCTAGAAATTCCCTCAAGAACTCCAGAAGAATGCTCRCAAGATTATGTGGCAATCAAAATGCCAATGACACCAAGTCCCACTCCCACCCCAAAGAGAGTGAACTTTCTCATATCTTCTCGCTCGGTCGATGCTCCTATGCATACTTCTCCAGGGCCTTCAGCTTCAAAAGGCAGATCATCCATAAGAAGCATTCTACCGAAATTGAGCTTCAGGTATCGGCCACCAACGGATACTGAAAAGGGTACTACTTCAGCACAAGAAGGTTCCTCTTCAGGTCATCGCGAAAAGCCATCAATCTCAAGATCACTATCCCTTAGTAAGATATTTACTCCTAGGATTAAAAGAACATCATCATTACCACTAGGAGAAATGGGACATTCAAATCCAGAATCTGCTCATGGTGGAAGTGTCGGTGGTCCTCTAAATAAAGGAGAGCCGCAGCGTAAGATAGCTCGCTCGCTTTCAGTGCCTGTCAATAACAAAGATAAAGGCATAAGGAGGATGGATTCATTTTACCGTATTGTTCCTACCACCCCTCGAGTYAAGGAAGGAAATGCATTGTCATCCACATCCCCAACAAAGAATTCCGAAATTAATGACGCTGATGATGARGACGGAGAAGATATACCTGAAGAAGAGGCTGTGTGTAGGATTTGTCTGGTTGATTTATGTGAAGGAGGTGAAACCTTCAAGTTGGAATGTAGCTGCAAAGGAGAACTTGCTCTGGCTCACCAAGAATGTGCAATTAAATGGTTTAGTATCAAGGGCAACAGAACCTGTGATGTATGCAAGGAYGATGTTCAGAACCTACCTGTCACTTTATTACGGATCCAAAGTGTTCGAGGCCGGAATCCAGGAATAAGTAGGACTCAGCTCGAAGATGTAAACGGATACAGGGTATGGCAGGAAGTTCCGGTGCTTGTCATTGTCAGCATGCTAGCTTATTTCTGTTTTCTTGAGCAGTTATTGGTCACGAAAATGGGAACCGGTGCAATCGCCATATCTCTTCCTTTTTCCTGTGTGCTAGGCCTACTTTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAGTTTGCACTTGTGGTTCTTTTTGCGCATATATTTTACTCCGTGGTTCATGTGCAACCAGTTCTGTCAATCCTTCTGGCAACATTCGCCGGTTTCGGTGTGGTTATGAGTGGAAGTTCTATTCTTGTTGAGTTCTTCAGATGGAGAAGAAGATGGCAACAACAACAACAAGGTCCACAACTGATGACACAACCTCGGCCTGCAAACACGCCGCGTCCGGTGGTGCCTCCGAACCAGAATCAAACTGTGGAACAAGATCAAGAGAACTCAACTCAAAGCTGA 1560 0.4481 MSSQEKSLTLGGHEQQHADADADAAASCRRTVSLPAQKVXDPMGITEETMHVPPRKRQNLLLEIPSRTPEECSQDYVAIKMPMTPSPTPTPKRVNFLISSRSVDAPMHTSPGPSASKGRSSIRSILPKLSFRYRPPTDTEKGTTSAQEGSSSGHREKPSISRSLSLSKIFTPRIKRTSSLPLGEMGHSNPESAHGGSVGGPLNKGEPQRKIARSLSVPVNNKDKGIRRMDSFYRIVPTTPRVKEGNALSSTSPTKNSEINDADDEDGEDIPEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNRTCDVCKDDVQNLPVTLLRIQSVRGRNPGISRTQLEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHVQPVLSILLATFAGFGVVMSGSSILVEFFRWRRRWQQQQQGPQLMTQPRPANTPRPVVPPNQNQTVEQDQENSTQS* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1482 519 SMART ringv_2 276 325 IPR011016 GO:0008270
Amo01g1482 519 MobiDBLite consensus disorder prediction 483 519 - -
Amo01g1482 519 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 46 492 - -
Amo01g1482 519 MobiDBLite consensus disorder prediction 501 519 - -
Amo01g1482 519 CDD RING_CH-C4HC3_MARCH 277 325 - -
Amo01g1482 519 MobiDBLite consensus disorder prediction 137 174 - -
Amo01g1482 519 Pfam RING-variant domain 277 324 IPR011016 GO:0008270
Amo01g1482 519 MobiDBLite consensus disorder prediction 243 257 - -
Amo01g1482 519 MobiDBLite consensus disorder prediction 1 216 - -
Amo01g1482 519 SUPERFAMILY RING/U-box 273 327 - -
Amo01g1482 519 MobiDBLite consensus disorder prediction 90 123 - -
Amo01g1482 519 PANTHER OS02G0165000 PROTEIN 46 492 - -
Amo01g1482 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 332 IPR013083 -
Amo01g1482 519 ProSiteProfiles Zinc finger RING-CH-type profile. 269 331 IPR011016 GO:0008270
Amo01g1482 519 MobiDBLite consensus disorder prediction 243 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1482 Amo-Chr1 30444219 30448496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1482 263 331 C3H Transcription Factor Family AT2G37950 44.286 4.29e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1482 - - gmx:100788108 722.235