Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1473 ATGCCAGTTCCACTTGCTCCTTATCCAACACCACCGGCTCCACATACTCCTCCATCCGCAAATGGTCAACAGAGCCAACTTGTGTGTTCTGGCTGTAGAAACCTTTTGCTCTATCCGGTTGGAGCCTCCTCTGTTTGCTGTGCTGTTTGCAATGCAGTCACCGCCGTGCCGCCTCCCGGAACGGAAATGGCCCAGTTAATCTGTGGAGGCTGCCATACATTACTAATGTACATCCGTGGCGCAACAAGTGTCCAATGCTCATGCTGTCACACTGTGAATCTAGCCATGGAAGCAAATCAGGTGGCACATGTCAATTGTGGCAGCTGCAGGATGCTACTGATGTACCAATATGGAGCAACATCTGTTAAATGTGCAGTTTGCAATTTTGTAACTTCAATTGGGGTCAGTTCAAATTATGCATCAACAAGCATCACAGAGCAGAAGTTCAGCAACTAA 456 0.4803 MPVPLAPYPTPPAPHTPPSANGQQSQLVCSGCRNLLLYPVGASSVCCAVCNAVTAVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGSCRMLLMYQYGATSVKCAVCNFVTSIGVSSNYASTSITEQKFSN* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1473 151 PANTHER PROTEIN LOL1 1 140 - -
Amo01g1473 151 PANTHER PROTEIN LSD1 1 140 IPR040319 -
Amo01g1473 151 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 103 132 IPR005735 -
Amo01g1473 151 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 65 94 IPR005735 -
Amo01g1473 151 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 26 56 IPR005735 -
Amo01g1473 151 Pfam LSD1 zinc finger 106 130 IPR005735 -
Amo01g1473 151 Pfam LSD1 zinc finger 68 92 IPR005735 -
Amo01g1473 151 Pfam LSD1 zinc finger 29 53 IPR005735 -
Amo01g1473 151 SUPERFAMILY Multiheme cytochromes 29 127 IPR036280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1473 Amo-Chr1 29814515 29816826 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Amo01g1473 zf-LSD1 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1473 - - rcu:8284618 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1473 01 29814515 29816826 Amo11g0858 11 20286034 20287743 hybridization
Amo05g0480 05 5556749 5559012 Amo01g1473 01 29814515 29816826 PCT
Amo01g1473 01 29814515 29816826 Amo05g0480 05 5556749 5559012 PCT