Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1459 ATGTTGAGTGTCACCAACGTTGGCCATCACCTTCTTTCATCCACGTTAGCTTCCACGTTAACTAAGTTAACGTGGAAGTTAACGTGGCTTCCTTGGGGTTGTGTGGTTGCTTTCAACGTTAAAAAGGTCAGTGAAACTGGCCAAAATGCCCTGGCATCAAAGGAGGAAGACTACAACATATTCTTGCAGAAGGTTAGAAGGGATACCATGATCTTGGAAGTCAAGAATGGGCTATGTGTTGATGTTGATGCCGCTAGGGCTCCGGAGGTTTCTATGACAGCTAGGATGAATGATCCATTGCAAGTGAGGACAAAAGGAACTAGCAGGGGTAATGATGCTTCTAGTTCAAAGGGACCAAAGAGGAGGAAGTGCAGCGATTGTGGAAGGCTTGGGCATCGCCGAACTCGATGCCCAGTTAGTCAGCAATCCGGAGAAATTCAGCACGATCCTCATGGTGAGGACAATGGCATTCAAGAGAGGCCAAGTGTAAGTAGTGTCTGCTTCAGGGTCATAGAGCGGAGGTGCAAACTGGTACAGGTCAGACATGTGGAGGGAATGCTCCTCAGGCCGACTGTGAGGGTCCAGTGCTTCCAGAGGGAACAAGGAAAAGGAAACAGCGGGTCAACCTTCCATCGACATTCCATCCATTCATCTTCCCCCAGTGATAGCACCGACAGTACATACGGGGTATTACGTGACTCATGGTGCAGGCCTATGAAGTTTATGATTATGTTGATGGTTATGTTTGATGTTGATATAATTAGATCCTACTATCATGCAAATGCTCCATTAGTCCTTAAGGGCAAATCTTGTACATTTAAAGAAGGGAGTAGAGTGGTAGTGGGAGGAAGAATCGGAAGTGGAAAAACTACACTTGTAAGCGCTTTATTCCGCTTAGTTGAGTCTGCAGGAAGTGATATTCTGATACAGGGGATCAACATATGCTCAATAAGGCTGAAAGATTTGAGAATGAAGCTAAGCATCATTCTTCAAGAACCAACACTTTCCAAGGGTAGCATTAGAACAAACTTGGACCCTTTACGTCTCTACACTGATCATGAAATATGGAAGGCTCTAGACAATTGTCAACTTAATGAAATAATTAGTTGTCTACCAAATCTCTTGGACTCTTTTGGTGAGTTAAATCTATGA 1152 0.4444 MLSVTNVGHHLLSSTLASTLTKLTWKLTWLPWGCVVAFNVKKVSETGQNALASKEEDYNIFLQKVRRDTMILEVKNGLCVDVDAARAPEVSMTARMNDPLQVRTKGTSRGNDASSSKGPKRRKCSDCGRLGHRRTRCPVSQQSGEIQHDPHGEDNGIQERPSVSSVCFRVIERRCKLVQVRHVEGMLLRPTVRVQCFQREQGKGNSGSTFHRHSIHSSSPSDSTDSTYGVLRDSWCRPMKFMIMLMVMFDVDIIRSYYHANAPLVLKGKSCTFKEGSRVVVGGRIGSGKTTLVSALFRLVESAGSDILIQGINICSIRLKDLRMKLSIILQEPTLSKGSIRTNLDPLRLYTDHEIWKALDNCQLNEIISCLPNLLDSFGELNL* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1459 383 Gene3D - 248 381 IPR027417 -
Amo01g1459 383 MobiDBLite consensus disorder prediction 101 158 - -
Amo01g1459 383 SUPERFAMILY Retrovirus zinc finger-like domains 104 140 IPR036875 GO:0003676|GO:0008270
Amo01g1459 383 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 251 377 - -
Amo01g1459 383 MobiDBLite consensus disorder prediction 115 133 - -
Amo01g1459 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 376 IPR027417 -
Amo01g1459 383 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Amo01g1459 383 Pfam ABC transporter 267 366 IPR003439 GO:0005524
Amo01g1459 383 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 251 377 - -
Amo01g1459 383 MobiDBLite consensus disorder prediction 203 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1459 Amo-Chr1 29137929 29140322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1459 276 377 Calmodulin-binding Proteins AT2G36910 30.097 1.04e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1459 - - var:108320460 173.326