Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1449 ATGGCTGGTTTGGATTTAGGAACAGCATCACGCTTCTTCTCCGGCGAAGAAGATGATACCAGCCAAGGTGGCGGAAGCGGAAGCGGCGGTGGAGGCGGTTTTGAGCTCGGCTCCGGCTCTGGAGGCCGGCGCCCCCGGGGCCGTCCCCCAGGCTCGAAGAACAAGCCGAAACCGCCAGTCATCATCACAAGAGAGAGTGCCAACACGCTAAGAGCTCACATCCTCGAAGTTGCGAGCGGCTCCGACGTCTTCGACAGCGTCGCTACCTACGCYCGGCGGCGCCAGCGCGGGATCTGCATCTTGAGCGGCAGCGGAACCGTWACCAATGTTACTATCCGGCAGCCAGCTGCGGCAGGCTCCGTTGTCACGCTCCAGGGAAGGTTCGAGATCCTGTCGCTCTCCGGCTCCTTCCTCCCGCCGCCTGCSCCGCCCGGTGCCACCAGCCTCAGCATKTACCTCGCTGGCGGCCAGGGACAGGTAGTCGGTGGAAACGTCGTCGGAGAGCTGATCGCGGCGGGGCCAGTGATCGCTCCCGGAAGTGCGGCGGCTGGAAGTCAGGGCTCCGCGGGCGTCGGAAACAACGCTTTTCCAGATCCTTCTTCGGGTTTGCCGTTCTTCAATTTGCCGCTTGGTATGCAGAATAATAATGTTCAATTGCCTGTTGACGGTTACTCTTCAGGTCCACGCCCTCCGTATTAA 699 0.6123 MAGLDLGTASRFFSGEEDDTSQGGGSGSGGGGGFELGSGSGGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVASGSDVFDSVATYARRRQRGICILSGSGTVTNVTIRQPAAAGSVVTLQGRFEILSLSGSFLPPPAPPGATSLSXYLAGGQGQVVGGNVVGELIAAGPVIAPGSAAAGSQGSAGVGNNAFPDPSSGLPFFNLPLGMQNNNVQLPVDGYSSGPRPPY* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1449 232 Pfam Plants and Prokaryotes Conserved (PCC) domain 71 175 IPR005175 -
Amo01g1449 232 MobiDBLite consensus disorder prediction 1 62 - -
Amo01g1449 232 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 183 232 - -
Amo01g1449 232 ProSiteProfiles PPC domain profile profile. 67 209 IPR005175 -
Amo01g1449 232 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 37 177 - -
Amo01g1449 232 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 177 IPR014476 GO:0003680
Amo01g1449 232 SUPERFAMILY AF0104/ALDC/Ptd012-like 67 175 - -
Amo01g1449 232 Gene3D - 70 178 - -
Amo01g1449 232 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 183 232 IPR014476 GO:0003680
Amo01g1449 232 CDD DUF296 71 146 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1449 Amo-Chr1 28856955 28857836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1449 1 232 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 50.877 9.36e-71 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1449 - - nnu:104606472 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0484 05 5588264 5589464 Amo01g1449 01 28856955 28857836 PCT
Amo01g1449 01 28856955 28857836 Amo05g0484 05 5588264 5589464 PCT