Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1424 ATGGATGCAACAAGTTCCGTAGATGAAAGCACCACGTGCACAAATGACTCGCTTTCCATAACCCTAACCCCGGCGACACCCGCGTCGCCATTCACCGCCACATCGAAGAAGCTGTCACCGCCGCCACCAAACAGCTTATGTCGTGTCGGCAGCGGTGCCAGCACAATCGTGGATCCGGACGTCGGTGGCGGCGTCACCGAAGTGGAGTCACGAAAACTCCCTTCCTCCAAGTATAAAGGTGTGGTTCCCCAACCAAACGGACGTTGGGGCGCTCAGATTTACGAGAAGCATCAACGCGTTTGGTTGGGGACCTTTAACGAGGAGGACGAGGCCGCTAGAGCCTATGACATCGCAGCACAACGGTTTCGTGGCAAGGATGCCGTCACCAACTTCAAGCCCCTCGGCAGTGTTGTGTCCAACAACACCGCGGTCGAGGACGAGGATTTCGAGAGCGAGTTTCTCAACTCGCATTCAAAATCCGAGATCGTGGACATGCTGAGAAAACACACGTACAATGACGAGCTGGAGCAGAGCAAGCGGAGCCGCGGCCTCATAGGGCGGCGGCTCAACCGAGCTGCGGGTAACGGAGGTTCCGCGGGGATGATGTCTTCATCCGGCGCGTGTGGAGGGAAGGCGCGTGAGCAGTTGTTCGAGAAGGCCGTTACGCCAAGTGACGTGGGAAAACTGAATCGGTTAGACGTCGGAGGAAAAGTGTGGCGGTTTCGTTACTCGTACTGGAACAGTAGCCAGAGCTACGTGCTAACGAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAACCTGAAAGCCGGTGACACGGTTTGTTTCCACCGGTCCACTGGACCGGACAGGCAACTGTTTATAGACTGGAAGGCGAGGAGTGTTGGTAATGATGGGGTTGGATTTTTTGGACCGATTGGACCGGTTTTGGAGCCGGTTCAGATGGTTCGGCTCTTTGGTGTTAACATTTTAAAGCTTCCTGGATCTGATGCCGGTGATAGCAATAACAATAATATTCTGAATATCAATAATGATAATAATGTTGCTGGTTCAATTGGTGGGTGCTTCAATGGGAAGAGAAAAGAGATGGAACTGTTTACGTTGGAGGGTAGCAAGAAGCCTAAGATCATTGGAGCTTTGTAA 1140 0.5298 MDATSSVDESTTCTNDSLSITLTPATPASPFTATSKKLSPPPPNSLCRVGSGASTIVDPDVGGGVTEVESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLGSVVSNNTAVEDEDFESEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGLIGRRLNRAAGNGGSAGMMSSSGACGGKAREQLFEKAVTPSDVGKLNRLDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDRQLFIDWKARSVGNDGVGFFGPIGPVLEPVQMVRLFGVNILKLPGSDAGDSNNNNILNINNDNNVAGSIGGCFNGKRKEMELFTLEGSKKPKIIGAL* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1424 379 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 232 IPR044800 GO:0003700
Amo01g1424 379 Pfam AP2 domain 76 124 IPR001471 GO:0003700|GO:0006355
Amo01g1424 379 Gene3D AP2/ERF domain 76 133 IPR036955 GO:0003700|GO:0006355
Amo01g1424 379 ProSiteProfiles B3 DNA-binding domain profile. 233 292 IPR003340 GO:0003677
Amo01g1424 379 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 232 - -
Amo01g1424 379 MobiDBLite consensus disorder prediction 1 48 - -
Amo01g1424 379 CDD AP2 76 131 IPR001471 GO:0003700|GO:0006355
Amo01g1424 379 SUPERFAMILY DNA-binding pseudobarrel domain 215 289 IPR015300 -
Amo01g1424 379 SMART B3_2 217 293 IPR003340 GO:0003677
Amo01g1424 379 Pfam B3 DNA binding domain 232 290 IPR003340 GO:0003677
Amo01g1424 379 ProSiteProfiles AP2/ERF domain profile. 77 132 IPR001471 GO:0003700|GO:0006355
Amo01g1424 379 Gene3D - 232 298 IPR015300 -
Amo01g1424 379 MobiDBLite consensus disorder prediction 1 41 - -
Amo01g1424 379 CDD B3_DNA 216 278 IPR003340 GO:0003677
Amo01g1424 379 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 233 379 IPR044800 GO:0003700
Amo01g1424 379 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 233 379 - -
Amo01g1424 379 SMART rav1_2 77 138 IPR001471 GO:0003700|GO:0006355
Amo01g1424 379 SUPERFAMILY DNA-binding domain 76 132 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1424 Amo-Chr1 26814315 26815562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1424 4 378 RAV Transcription Factor Family AT1G13260 51.095 3.48e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Amo01g1424 B3 1.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1424 K09287 - gmx:100801107 511.531