Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1422 ATGGAGAAATCGAACACACCAATGGACACATCAGCTGCCAGCTGGTTATCTGAATTGGAAATTGATGAGGACTACAATTTCTTTCCGGAAGTTGATTTTGATCTAGTCGATGAGGAAGATTTTCTTTCACATGAGTTAATAGCAAGTGAGGATCTTCAAGGGAAGTCTGCACTACAGGACCAATCTTTATCTGTGGAATGCAAATCCAAAGAGCTAAGCAATTCTTGCACCGATGAAATTACCAGTTTTGAAGAGATGCTAGGAAGCATCAACGATGAAACCTTTTCACCGAAACTTTCTTCATCATCTTCAATTTTATCCTTAAGGTCTCAGATTCTGTCCTTTGATAACTCAGACTCGTTATCATCGTCTCCATCCAATAATACGACAGAATTTTATGAGTTGAAAAACACCTTAAACCAAAGACAAGACTCAGTTGAAACTCCAAATAATAATAATAAAAAGAGTGATTCCTTGAATACACAAAATGTGGAAGCAAAGAGTACCTCAACACTTGGTAAGAGGTCACCATCTCATGCTCACGATCATATCATAGCTGAGAGAAAGAGAAGAGAGAAGATCAGTCAGAGTTTCATTGCTCTTGCAGCCCTTGTTCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGGGACTCTATCAGGTATGTGAAAGAGCTGAAAGAGCGTTTGGCAGTGCTCGAAGAAGAATCCAAGAAAACAAAGGCGAAAAAAGCAGAACAACTCCATGGTCATGGTGCTGCTGTGTTCTCCTCGTTATGCGAAGAGACCATTGATGGTAGTCTTCCACAGGTTGAAGCAAGAGAGTGGGGGCAACAAGTGTTGCTTCGAATCCACTGCTGGAAGGAAGAGGGCATTTTGGTCAGAATATTGTCTGAGATTCAAAGCCTTCAATTGATGCTTCTTAATAGCAGTGTCTTATCATTTGGAGATTCCATTCTTGACATAACCATCATTGTTCAGGCGGGCGAAGGTTACAACTTGACCCTTAATGAACTTGTCAAGAACCTACGCACCGCTACTTTGAAACTCATGTCATAG 1062 0.4124 MEKSNTPMDTSAASWLSELEIDEDYNFFPEVDFDLVDEEDFLSHELIASEDLQGKSALQDQSLSVECKSKELSNSCTDEITSFEEMLGSINDETFSPKLSSSSSILSLRSQILSFDNSDSLSSSPSNNTTEFYELKNTLNQRQDSVETPNNNNKKSDSLNTQNVEAKSTSTLGKRSPSHAHDHIIAERKRREKISQSFIALAALVPGLKKMDKASVLGDSIRYVKELKERLAVLEEESKKTKAKKAEQLHGHGAAVFSSLCEETIDGSLPQVEAREWGQQVLLRIHCWKEEGILVRILSEIQSLQLMLLNSSVLSFGDSILDITIIVQAGEGYNLTLNELVKNLRTATLKLMS* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1422 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983
Amo01g1422 353 Coils Coil 217 244 - -
Amo01g1422 353 Pfam Helix-loop-helix DNA-binding domain 183 227 IPR011598 GO:0046983
Amo01g1422 353 MobiDBLite consensus disorder prediction 140 182 - -
Amo01g1422 353 PANTHER BHLH TRANSCRIPTION FACTOR 5 353 - -
Amo01g1422 353 Gene3D - 170 245 IPR036638 GO:0046983
Amo01g1422 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 244 IPR036638 GO:0046983
Amo01g1422 353 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 5 353 - -
Amo01g1422 353 MobiDBLite consensus disorder prediction 140 175 - -
Amo01g1422 353 SMART finulus 184 233 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1422 Amo-Chr1 26734862 26740435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1422 153 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.050 2.34e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo01g1422 HLH 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1422 - - aip:107617512 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1422 01 26734862 26740435 Amo11g0873 11 23345826 23351325 hybridization
Amo05g0494 05 5754024 5756095 Amo01g1422 01 26734862 26740435 PCT
Amo01g1422 01 26734862 26740435 Amo05g0494 05 5754024 5756095 PCT