Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1420 ATGCGTTTGCTCCTTTCGTCGTCACACGAGCTCTCTCAGCCGTGCTCTTGTCTTACGAGCTCCCTCTGCCGCTGCTCTCGCGCTGCTTCTTCTCTCCTCGCCGGAGGTTTGTCATCGTCTTCTCTCATCGCTGTTAGTTCAGGTCCGCTGAAGATATGGGATTCAATTATGACTGGTGGATTTGAATTCTATAAGATGGACGGATTTCCAGGAGCACTTTCAGTTATTTCAGCTATAGATGAAGAAGTGAAATCTAAGAATGTAGATTCAGTGTTCCACATTGGAGACATAAGCTATGCCACTGGTTTTCTAGTAGAATGGGATTTCTTCCTTAGCCTTATTAATCCAGTAGCTTCCAGACATATGAAACATATTTTCCAATGCCAACATCACTCTATTGAACAAGCAAGTGTTCATTTCACTGTTATATCAACCGAGCATGATTGGTCACAAAATTCTGAGCAGTATGCATGGATGAAAAAGGACATGGCTTCAGTTAATAGACAAAAAACTCCATGGCTAATATTCATGGGACATAGGCCAATGTATACCTCAGATCATTCATCTGCTGACAAGAATTTTGTTGCAACTCAAGCAGCGCTTGTGCTTAACGCTTCTCGCCGATTTCGCTACACCTTGGACCTGAAGAAAGAAGAAGAAAAGGAGCAAGTGCTGAGAAAGATTAGAGGGCATGTTCAAGTCATCAAAATGTTTGTTTGGGATGCTTGCAAGGATCTGACCTTGATTATTTCAATCGTAGCTGCTACAGCTTCATTAGTACTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGTGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCGGGACCTAAATGAGGAGAAGAGAAACATTCATTTGGAGGTTGAAAAGAATTCTAAGAACCTTATTCTGCTATCTGGTTGTAAAGTTGCAGATGGCAGTGTAATGGCTTCGGGATCCGATGATGCTCTTAAGAGTGTTGGTTTAGACTTACCAACTGAATCTGGAACTGTGATCCCCTATGTTCACTTGATGAAACAAGCTCACAAGATTTTGAAGACAGTTATATAG 1128 0.4131 MRLLLSSSHELSQPCSCLTSSLCRCSRAASSLLAGGLSSSSLIAVSSGPLKIWDSIMTGGFEFYKMDGFPGALSVISAIDEEVKSKNVDSVFHIGDISYATGFLVEWDFFLSLINPVASRHMKHIFQCQHHSIEQASVHFTVISTEHDWSQNSEQYAWMKKDMASVNRQKTPWLIFMGHRPMYTSDHSSADKNFVATQAALVLNASRRFRYTLDLKKEEEKEQVLRKIRGHVQVIKMFVWDACKDLTLIISIVAATASLVLGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVEKNSKNLILLSGCKVADGSVMASGSDDALKSVGLDLPTESGTVIPYVHLMKQAHKILKTVI* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1420 375 SUPERFAMILY Metallo-dependent phosphatases 76 196 IPR029052 -
Amo01g1420 375 Pfam Calcineurin-like phosphoesterase 124 193 IPR004843 GO:0016787
Amo01g1420 375 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 197 236 - -
Amo01g1420 375 PANTHER - 197 236 IPR000528 GO:0006869|GO:0008289
Amo01g1420 375 SUPERFAMILY Calcium ATPase, transmembrane domain M 237 309 IPR023298 -
Amo01g1420 375 Pfam Ca2+-ATPase N terminal autoinhibitory domain 197 220 IPR024750 GO:0005516
Amo01g1420 375 Gene3D - 202 239 - -
Amo01g1420 375 PANTHER - 238 314 IPR000528 GO:0006869|GO:0008289
Amo01g1420 375 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 238 314 - -
Amo01g1420 375 Gene3D - 124 201 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1420 Amo-Chr1 26559382 26563179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1420 238 321 Primary Pumps ATPases AT5G57110 78.571 2.52e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1420 K01537 - aip:107633681 150.599