Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1415 ATGATGCAAATCTCCACCACCAACAAGTACTTGCCTGAATTTGGAATGGATGAGTCGGTTTTCTTCCATAATCAATACCCAATGATGGATTCATCAACAATCACATCATCTCCAACACCATGGCCGCAGATTAATCTTGATGATATTGACTTCAACCAAATCCAAGAGTCCTTCTCTTCAGCCTCATCCCCAAAGAGCTACACCTCAAACAAGCGCTTCAACTCTTCTTCCGCTGCCGGAACCACCATGCCACAAAGCTCTTTCTCACCAATTGAAAGACCAACTAAGCAACAAAAAAATGCTTATAGCCATGGGATTAGTACTAATACCACTACTACTACCAGCAATGAATTCATGGTTCCCAAAGCTTCTTCCTCTTCTTCTTCCCAAATCATCTCGTTCGAGCAGCACTCGAACGCTTCTTCTTCGGTTGCTTCCTATAACCACCATCATCAGCAACTCTACAATAATAACCCTTCTTCAGATCAGGGTAACCATGTTTTGAGGCCCAAGACTGAGAGTGTGTGCAGTGAGAATTTGGATTTTGCCAGTGTGGTTTCTCAAGCTGATAAGGCCAATAAAGGTTCCGCGGCGGCGGCCACCACCAGAAACCCAACTCAGGCCCAAGATCACGTCATTGCCGAAAGAAAACGAAGGGAGAAGCTCAGCCAGAGGTTCATTGCACTTTCCGCCATTGTTCCTGGACTCAAGAAGATGGACAAGGCTTCTGTATTGGGAGATGCTATCAAATATCTGAAGCAACTGCAAGAAAAAGTGAAGATTCTAGAAGAGCAAGTTGCTGAAAAAACCGTAGAATCCGCAGTTTTCGTGAAGAGATCCATCCTCTTCGCAGAAGACAATGGATCTTCTTCGGAAGAGAACCCGGAGATAGAAGCAAGAATTTCAGGCAAAGACGTTCTCATTAGAATCCACTGTGACAAACACAGTGGAATAGTGCCAAAAATAATCAACGAGATTGAGAAGCATGATCTCAGTGTTCAAAGTAGTAGCTTCTTGCCCTTTGGGAACAACTCACTTGACATCACCATTGTTGCTCAGATGAAGAAGGAATGTACATTGACAGCAAAAGATATAATAAAAGGCTTAAATCAGACTTTGAAGCAGCTGAGTTGA 1134 0.4347 MMQISTTNKYLPEFGMDESVFFHNQYPMMDSSTITSSPTPWPQINLDDIDFNQIQESFSSASSPKSYTSNKRFNSSSAAGTTMPQSSFSPIERPTKQQKNAYSHGISTNTTTTTSNEFMVPKASSSSSSQIISFEQHSNASSSVASYNHHHQQLYNNNPSSDQGNHVLRPKTESVCSENLDFASVVSQADKANKGSAAAATTRNPTQAQDHVIAERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQVAEKTVESAVFVKRSILFAEDNGSSSEENPEIEARISGKDVLIRIHCDKHSGIVPKIINEIEKHDLSVQSSSFLPFGNNSLDITIVAQMKKECTLTAKDIIKGLNQTLKQLS* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1415 377 Gene3D - 198 270 IPR036638 GO:0046983
Amo01g1415 377 Coils Coil 245 272 - -
Amo01g1415 377 CDD bHLH_AtNAI1_like 208 280 - -
Amo01g1415 377 MobiDBLite consensus disorder prediction 142 168 - -
Amo01g1415 377 Pfam Helix-loop-helix DNA-binding domain 209 256 IPR011598 GO:0046983
Amo01g1415 377 PANTHER BHLH TRANSCRIPTION FACTOR 8 376 - -
Amo01g1415 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 274 IPR036638 GO:0046983
Amo01g1415 377 PANTHER TRANSCRIPTION FACTOR NAI1 8 376 - -
Amo01g1415 377 SMART finulus 212 261 IPR011598 GO:0046983
Amo01g1415 377 MobiDBLite consensus disorder prediction 57 122 - -
Amo01g1415 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 255 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1415 Amo-Chr1 26429712 26432655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1415 137 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.775 2.21e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo01g1415 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1415 - - adu:107482661 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1415 01 26429712 26432655 Amo11g0874 11 23394633 23399865 hybridization
Amo05g0497 05 5775270 5776950 Amo01g1415 01 26429712 26432655 PCT
Amo01g1415 01 26429712 26432655 Amo05g0497 05 5775270 5776950 PCT