Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1401 ATGCGCCTCTTCCTCTTCCACTTCCTCTTCTTCCTCCTCTGCCTCCATCTCACGGCCCACTCCGCCCACATCTCCGAGCGCCGTGCCCTGCTCTCCTTCAAAGCCGCCTCCATTACCTCCGATCCCACCTCCGCTCTCTCCTCCTGGTCCCCCACCTCCCCCTCCGACCACTGCACATGGCGCGGCGTCTCCTGCGACCACCACCTCCGCCACGTCACCTCCCTCAACCTCTCTTCCCTCTCCCTCTCCGGCACTCTCTCCGGCGACCACCTCTCCCTCCTCCCCTTTCTCACCAACCTCTCCCTCTCCGATAACAAATTCTCCGGCCCTATTCCCAGTTCCCTCTCCTCTCTCACAAACCTCCGCTTCCTCAACCTCTCTAACAACATCTTCAACGGAACCTTCCCTAATGAACTTTCCATTCTCCACACTGTTGAAGTTCTTGACCTTTACAATAACAACTTGACCGGTCTTCTTCCCCTCGCCGTCACCGACATGACTGAGCTTCGCCACTTGCACCTCGGCGGAAACTTCTTCTCCGGCGAAATTCCGCGGGAGTACGGCAAATGGCAGAAGCTGGAGTACCTTGCGGTTTCCGGTAACGAGCTTGTCGGGAAAATCCCGCCGGAGATCGGAAACCTTAGCTCCCTCCAGGAGCTTTATGTAGGGTACTACAACACTTACGACGGCGGAATACCGCCGGAGATCGGGAATTTGTCCGAGCTTGTCAGGCTCGACGCCGCGTACTGTGGACTCTCCGGCGAGATTCCGGCGGAGATAGGGAGGCTTCAGAAGCTCGACACCCTCTTCCTCCAGGTGAATGCGCTTTTCGGTTCACTAACTACGGAGCTTGGGAGCCTTAAAAGTCTAAAATCAATGGATTTATCGAACAATATGCTCGCCGGCGAGATTCCCGCGAGCTTTTCGGCGCTGAAGAACATAACTCTCGTGAACCTCTTCCGCAACAAGCTCCACGGTGAGATACCGGAGTTCATCGGTGAGCTTCCGTCGCTGGAGGTGCTTCAGCTGTGGGACAACAACTTCACCGGAAGCATTCCTCAGAATTTGGGGAAGAACGGCAGGCTCACGATCGTTGACCTCTCGTCGAACAAGCTTACAGGAACTTTGCCACCGTTAATGTGTTCCGGTAACCGTCTTCAGACACTGATAACTCTCGGTAACTTCCTCTTTGGTCCAATTCCTGATTCACTCGGAAAGTGTGAGTCTCTGAGTAGGGTGAGAATGGGTGAAAATTTCTTGAACGGTTCAATCCCTAAGGGTCTGTTTGGGCTTCCGAAACTGACACAGGTTGAACTTCAGGATAATCTTCTGACCGGAGAGTTTCCTGTTTCTGGTTCCGTTGCACCGAACTTGGGGCAAATTAGTCTTTCCAATAACAAGCTTTCAGGGCCGTTACCACCGTCCATTGGGAACTTCTCCAGCATGCAGAAGCTTCTACTAGACGGGAACCGGTTCTCGGGCCGGATCCCATCGGAGATTGGCAGGCTACAGCAGCTCTCCAAGATGGATTTCAGCAATAATAAGTTCTCTGGTCCGGTTGCACCGGAGATCAGCCGGTGCAAGTTGTTGACATTCGTTGATCTCAGCCGCAACGAACTCTCCGGCGAGGTTCCAAATGAGATCACTGGAATGCGGATACTGAACTATATGAACCTTTCAAGGAACCACTTGGTTGGTCCAATTCCGGGATCTATTGCTTCCATGCAGAGTTTAACATCGGTGGATTTTTCTTACAACAATCTCTCTGGTTTGGTTCCTGGCACTGGCCAATTCAGTTACTTCAACTATACCTCTTTCTTGGGAAACCCCGAACTCTGTGGCCCTTATTTAGGTCCTTGCAAAGACGGTGTTGTCAATGGCCCTCGTCAACCTCATGTTAAGGGTCCACTGTCTTCTTCCTTGAAGCTATTGCTGGTTATTGGGCTTCTTGTTTGCTCTATCTTGTTCGCTGTGGCGGCAATCTTCAAGGCGCGGTCCCTGAAGAAGGCGAGCGAGGCGCGCGCCTGGAAGCTCACGGCGTTCCAGCGATTGGACTTCACTGTGGACGATGTTCTGGATTGCTTGAAGGAGGATAACGTCATAGGAAAAGGAGGTGCTGGAATTGTGTACAAAGGGGCCATGGCGAATGGGGATCAAGTTGCTGTAAAGAGGTTACCGGCTATGAGTAGAGGATCATCCCATGATCATGGTTTCAATGCTGAGATTCAAACTTTGGGGAGGATTCGACACAGGCACATTGTTAGGTTGTTGGGGTTCTGTTCGAACCACGAGACGAATCTTCTTGTGTATGAGTACATGCCTAATGGAAGCTTGGGTGAGGTTCTTCATGGGAAGAAAGGGGGTCACTTACATTGGGACACAAGGTACAAGATTGCTGTGGAGGCTGCAAAGGGGCTTTGTTACTTGCATCATGATTGTTCGCCGCTTATTGTGCACCGCGATGTCAAGTCGAACAATATCCTTCTTGATTCCAGCTTTGAAGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTCCTCCAAGATTCTGGAACATCTGAATGCATGTCCGCTATTGCCGGTTCATATGGATACATAGCTCCAGAGTATGCCTACACTTTGAAAGTCGATGAGAAGAGCGATGTGTACAGCTTTGGCGTTGTTCTTTTGGAGCTTGTAACCGGAAGGAAACCGGTTGGTGAGTTCGGTGACGGCGTGGACATTGTGCAATGGGTGAGGAAAATGACAGACTCAAACAAGGAAGGAGTGCTTAAGGTTCTTGATCCTAGGCTTCCCTCAGTTCCCCTCCATGAGGTGATGCACGTTTTCTATGTCGCCATGCTGTGTGTCGAAGAACAAGCTGTAGAGCGACCAACCATGCGCGAAGTGGTTCAAATTCTCACCGAGCTTCCAAAGCCACCGGGATCTAAGCAGGGAGATTCAACAATCACCGAGTCCTCATCATTGTCATCATCAAACAGCTTAGAGTCTCCAATGGCCACATCATCGAAAGAGCATACTAAAGATAATCAAAACCCTCCGAAGTCACCGCCACCAGATCTTCTTAGCATCTAA 3072 0.512 MRLFLFHFLFFLLCLHLTAHSAHISERRALLSFKAASITSDPTSALSSWSPTSPSDHCTWRGVSCDHHLRHVTSLNLSSLSLSGTLSGDHLSLLPFLTNLSLSDNKFSGPIPSSLSSLTNLRFLNLSNNIFNGTFPNELSILHTVEVLDLYNNNLTGLLPLAVTDMTELRHLHLGGNFFSGEIPREYGKWQKLEYLAVSGNELVGKIPPEIGNLSSLQELYVGYYNTYDGGIPPEIGNLSELVRLDAAYCGLSGEIPAEIGRLQKLDTLFLQVNALFGSLTTELGSLKSLKSMDLSNNMLAGEIPASFSALKNITLVNLFRNKLHGEIPEFIGELPSLEVLQLWDNNFTGSIPQNLGKNGRLTIVDLSSNKLTGTLPPLMCSGNRLQTLITLGNFLFGPIPDSLGKCESLSRVRMGENFLNGSIPKGLFGLPKLTQVELQDNLLTGEFPVSGSVAPNLGQISLSNNKLSGPLPPSIGNFSSMQKLLLDGNRFSGRIPSEIGRLQQLSKMDFSNNKFSGPVAPEISRCKLLTFVDLSRNELSGEVPNEITGMRILNYMNLSRNHLVGPIPGSIASMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPELCGPYLGPCKDGVVNGPRQPHVKGPLSSSLKLLLVIGLLVCSILFAVAAIFKARSLKKASEARAWKLTAFQRLDFTVDDVLDCLKEDNVIGKGGAGIVYKGAMANGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSSFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPGSKQGDSTITESSSLSSSNSLESPMATSSKEHTKDNQNPPKSPPPDLLSI* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1401 1023 SMART serkin_6 695 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g1401 1023 Gene3D Ribonuclease Inhibitor 228 381 IPR032675 -
Amo01g1401 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Amo01g1401 1023 Gene3D Ribonuclease Inhibitor 142 227 IPR032675 -
Amo01g1401 1023 Gene3D Ribonuclease Inhibitor 530 620 IPR032675 -
Amo01g1401 1023 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515
Amo01g1401 1023 Gene3D Ribonuclease Inhibitor 25 141 IPR032675 -
Amo01g1401 1023 Gene3D Ribonuclease Inhibitor 456 528 IPR032675 -
Amo01g1401 1023 Gene3D Ribonuclease Inhibitor 382 455 IPR032675 -
Amo01g1401 1023 MobiDBLite consensus disorder prediction 967 1023 - -
Amo01g1401 1023 SUPERFAMILY Protein kinase-like (PK-like) 688 966 IPR011009 -
Amo01g1401 1023 SUPERFAMILY L domain-like 360 620 - -
Amo01g1401 1023 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 1007 - -
Amo01g1401 1023 SUPERFAMILY RNI-like 74 397 - -
Amo01g1401 1023 Gene3D Transferase(Phosphotransferase) domain 1 773 986 - -
Amo01g1401 1023 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Amo01g1401 1023 Pfam Protein tyrosine and serine/threonine kinase 696 966 IPR001245 GO:0004672|GO:0006468
Amo01g1401 1023 ProSiteProfiles Protein kinase domain profile. 695 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g1401 1023 Gene3D Phosphorylase Kinase; domain 1 661 772 - -
Amo01g1401 1023 SMART LRR_typ_2 575 598 IPR003591 -
Amo01g1401 1023 SMART LRR_typ_2 166 190 IPR003591 -
Amo01g1401 1023 SMART LRR_typ_2 142 165 IPR003591 -
Amo01g1401 1023 SMART LRR_typ_2 94 118 IPR003591 -
Amo01g1401 1023 SMART LRR_typ_2 335 359 IPR003591 -
Amo01g1401 1023 SMART LRR_typ_2 479 503 IPR003591 -
Amo01g1401 1023 SMART LRR_typ_2 287 311 IPR003591 -
Amo01g1401 1023 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 1007 - -
Amo01g1401 1023 MobiDBLite consensus disorder prediction 974 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1401 Amo-Chr1 25815687 25819285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1401 16 997 Receptor kinase-like Gene Family AT5G65700 80.061 0.0 1578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo01g1401 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1401 - - gmx:100499646 1684.46