Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1392 ATGAGACAGAATGCAATTTCAGATCATACAATTGTCCTTATGCTGGATCAGAGTGCTCTGTTGCCGGGAACATTCCTTTCCTTGTTGCACATCTGCACAGGATGCATATTCAACCACCGATATGTAAAATCAAATCCCCATGAAGTTGAGAATGCAACATGGATGCTCATGCCACGCACAACACTAGTTATGGACACGCCGGAGAGGAACCAGATCAACCCTCCCTTCTCTCGTGTCGAGGATTCCCCTGTATTCAGTTTTATCAACAGTTTGTCGCCTATAAAGCCCGTGAAGTCTGCCCAGGTTGGTCAAACATTCAGCTCGCTTAGCTTTCCTTCCCCTCCGCGTGCTTTTACTTCATCCAATCTCACCTGTTTCAAGGAATCAAAAGTTCTCAGGAGGCATAACCTTTTTGGGGCATCAAGGCCTGGGTTGTCATCTGAAGATGGTAATAAATTTCAGACAAGTGAAGAGGCTATTGCAGATTCATTTCATCCATATAATAACTCGAGGGAATCTCAGGGAAATTTTCATGATGGAATATCTGTAGTTGATGATTCGATTGCTCTACCTGGTGAGCACACAGACTTCTCAGCTGAGATACTACAGGCCTTAAATTATAATAATTGTGGTAACCCTGGCTCTGATCCTGGTCATGAGGCTAACTCTCTTGAAGTCTTTAATCAGGGGTTGTGTCAATTTGATCCGAAGGGCCAAGAATCAGAGTGTAATTGGGATAATTTAATCTCTGGAGATACTGATTTCTTCGTTTTCAATTCCCCAAATGACGCAGCTTTTAAGGGTATAATGCAGAAACCAGATTCTCATTTTATGTCTCTGGTACCGGAATCTTCCATATATAATGGTCTGAGAGATAGCAAACTTAAAATAGAAGATTATCGTCATGAGCCTTTAGCAATCACAGGCCAAATGCAGGACAAACACTGCGTTGCCATGACTAGCAAAATAAAGGAAAAACCAGATGTTGAGCTTGTTTCTGTGATGAACCGTGGTACACGGAGGCGATGTCTAAACTTTGAGACTGACAGTGTGCAAAGGAAGAACTCAGATGATAATTTAAAATCCGGTTCTCTTGGATATGAAAAACAATTGGTTTCGGCAAAACGCAAAAGCAGTTCACAGCAATGCACTATGCCTGCAGTTGGCTTACATTTGAATGCACCCGACAAAGAAGTCATAAGTAATGACGAGTCGTCTTGTGGAATTCATCTTAATGTTCCCAGTTGCACTTCCGTGCAAATCTATACCAGCTATGAACATCAGGAACCACTGGCAATAGGAGTGGATTCATCAAACATTGGGCCTGAGCCAGCTAAGGATAATTCTCATGCATTATATTCCACTGTTAATGATGTCAGTCAGAATAGTCCCAAAAAGAAAAGACATGGAGACTGCAAGCGTTGCAAGTGCAAGAAATCAAAGTTTCGCAAGCAGATCGAGTCTCGCAATCCTCTGGCTTTTGCTCCTAAAGTCATTGCTGAACCTGAAATTGGGAATGATCCAAATAAAACTCCAGCACCAGCACGACACAAGAGAGGATGCAACTGTAAGCAATCAGTCTGCCTAAAGAAATACTGTGAATGCTTTCAGGCTGGTGTTGGATGCTCCTTAAGCTGTAGATGTGAAGGGTGTAAGAACACATTTGGTAGAAAGGACGGCGCTAATTCTATAGGAGTAGAAGCCCAGCTAGAAGTAGAAATAGAGGTCTGTGGAAAAGTTGTTGAAAAAGTATCACAGAGAATTGAAGTTCAGAACTCCGATAATCATCCAGATTTTGTTCCAATCTCTACGCCATTCCCGCTGTTTAGTTCATTGTCAGAGGGGAAACCAAACACTCGTTGGTCTCAACCACCTAAGCATTCTCAAGCTGTTTCGGACCAGGAAATGACAGATGTTCTTGGAGGCGGAGGCAGAAGTGATAGGTCTCCCATGACCATCAAAACTTCTTCTCCAAGTGGGAAGAGGATTTCCACTTCTAAGGGTGACTTGACACTTTCTTTTCCTTCTCCTAATCGTCATCAATAG 2046 0.4267 MRQNAISDHTIVLMLDQSALLPGTFLSLLHICTGCIFNHRYVKSNPHEVENATWMLMPRTTLVMDTPERNQINPPFSRVEDSPVFSFINSLSPIKPVKSAQVGQTFSSLSFPSPPRAFTSSNLTCFKESKVLRRHNLFGASRPGLSSEDGNKFQTSEEAIADSFHPYNNSRESQGNFHDGISVVDDSIALPGEHTDFSAEILQALNYNNCGNPGSDPGHEANSLEVFNQGLCQFDPKGQESECNWDNLISGDTDFFVFNSPNDAAFKGIMQKPDSHFMSLVPESSIYNGLRDSKLKIEDYRHEPLAITGQMQDKHCVAMTSKIKEKPDVELVSVMNRGTRRRCLNFETDSVQRKNSDDNLKSGSLGYEKQLVSAKRKSSSQQCTMPAVGLHLNAPDKEVISNDESSCGIHLNVPSCTSVQIYTSYEHQEPLAIGVDSSNIGPEPAKDNSHALYSTVNDVSQNSPKKKRHGDCKRCKCKKSKFRKQIESRNPLAFAPKVIAEPEIGNDPNKTPAPARHKRGCNCKQSVCLKKYCECFQAGVGCSLSCRCEGCKNTFGRKDGANSIGVEAQLEVEIEVCGKVVEKVSQRIEVQNSDNHPDFVPISTPFPLFSSLSEGKPNTRWSQPPKHSQAVSDQEMTDVLGGGGRSDRSPMTIKTSSPSGKRISTSKGDLTLSFPSPNRHQ* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1392 681 SMART CXC_2 516 557 IPR033467 -
Amo01g1392 681 ProSiteProfiles CRC domain profile. 449 556 IPR005172 -
Amo01g1392 681 MobiDBLite consensus disorder prediction 649 681 - -
Amo01g1392 681 MobiDBLite consensus disorder prediction 613 635 - -
Amo01g1392 681 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 519 554 IPR005172 -
Amo01g1392 681 MobiDBLite consensus disorder prediction 613 681 - -
Amo01g1392 681 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 483 666 IPR044522 GO:0003700
Amo01g1392 681 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 64 481 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1392 Amo-Chr1 25001943 25006652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1392 79 561 CPP Transcription Factor Family AT4G14770 34.552 1.21e-68 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Amo01g1392 TCR 7.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1392 - - aip:107628213 939.102