Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1373 ATGATGAGGCTGAAGACATATGCCGGTCTCAGTTTGATCGCAACCCTGGCTATCACATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCGGCAATGGTGTATCTTTCAACTTCCAAGATCAGCTTAGTGCTTCTTCTCAACATGGGTTTGGTTATTATGTGTATTCTATGGCAGTTGACTAAAAAGGTATTCCTGGGTTCTCTTAGAGAAGCTGAGGTAGAAAGGCTTAACGAGCAATCGTGGAGGGAGGTTATGGAAATCCTCTTTGCCATTACTATTTTTAGGCAGGATTTCTCAGTTACATTTCTTGCGATGGTCACAGCGCTATTGTTGATTAAAGCTTTGCATTGGTTGGCTCAAAAGAGGGTTGAGTACATTGAGACAACTCCTACGGTGCCCATGTTGTCCCATGTTCGGATTGTATCTTTTATGGGTTTCCTTCTTCTCCTCGATAGCCTATTCTTATACAGTAATCTGAAGCATCTGCTACAAACATGGCAACCATCAGTTTCGATATTCTTCTCTTTTGAGTACATGATACTGGCAACGACAACAGTGTCGATTTTTGTAAAATATCTTTTCTATGTTAGTGACATGCTCATGGAAGGACAATGGGAAAGGAAACCAGTCTTCACATTCTACTTGGAACTTATCAGGGACTTGCTTCACTTGTCTATGTATCTGTGCTTCTTCCTCGTAATTTTTGTAAACTATGGTGTTCCTTTGCACTTAATACGGGAGCTCTATGAGACATTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATACGATATCGTAAGATCACTTCAAATATGAACGACCGTTTTCCAGATGCAACGCCTGAAGAGCTTAATGCAAGTGATGCAACTTGCATTATCTGTCGTGAAGAGATGACTACTGCAAAGAAACTTATATGTGGACATTTGTTTCATGTTCATTGCCTCCGATCATGGTTGGAGCGGCAACATACTTGCCCTACCTGCAGAGCCCTGGTTGTTCCCCCAGAAAATGGGGCAACAGCAACTGTAGGCCAGCAAGGAGCACAACCAGATGGTCATCGACAGGGAACAGGGACTAGCACTGGAAGCACAGCTCAAAATGAGGTTGGCAGTGGTGGGGCAATTGATAATTTGAGTCAGCATCAAGCCCGACTTCAAGCTGCAGCTGCAGCAGCAGCTTCAATATATGAGAAGTCTTATGTTTATCCCTCCCCAACATCTTTAGTGTGCTCTCCTGGGTACACTCTTCAACCCCCAGTTCAGATGTCTATGGGCAAATCTGTTAACACGGCACTCAATGGAGAACAAGCTTCTGGTGAACAGGCACAACAGCAATTTGTTCTCCCTGGTGGACCAATGATATCCTTTCCTCAAATGGGGCCCTTCCATTTTCTTCCTTCCCAAACACGCGGAGCCCCTGCGAATTATGGAGTGGAGTTTGGAGTTGACCCAAATATGCCAAGCTCTCACCTGGAAGCTCATAGAAAACTACTTCAATATCAGATTGAGATTCTGCAAAATCAGCTCAAGCTTTTGCAGAGGACAAAGGTTGAAACAGGTGTAGATGAGGGTACATCTTCATCATCCACATCGACAGCAGATAGCAGAGGCAAGCAAATAGCATCGAGTCATGAGATTCATCGTGAAAAAGAATAA 1659 0.4358 MMRLKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCILWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVPMLSHVRIVSFMGFLLLLDSLFLYSNLKHLLQTWQPSVSIFFSFEYMILATTTVSIFVKYLFYVSDMLMEGQWERKPVFTFYLELIRDLLHLSMYLCFFLVIFVNYGVPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGATATVGQQGAQPDGHRQGTGTSTGSTAQNEVGSGGAIDNLSQHQARLQAAAAAAASIYEKSYVYPSPTSLVCSPGYTLQPPVQMSMGKSVNTALNGEQASGEQAQQQFVLPGGPMISFPQMGPFHFLPSQTRGAPANYGVEFGVDPNMPSSHLEAHRKLLQYQIEILQNQLKLLQRTKVETGVDEGTSSSSTSTADSRGKQIASSHEIHREKE* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1373 552 Pfam Ring finger domain 291 330 IPR001841 -
Amo01g1373 552 MobiDBLite consensus disorder prediction 340 375 - -
Amo01g1373 552 SMART ring_2 292 329 IPR001841 -
Amo01g1373 552 PANTHER RING ZINC FINGER PROTEIN 1 462 - -
Amo01g1373 552 SUPERFAMILY RING/U-box 272 336 - -
Amo01g1373 552 MobiDBLite consensus disorder prediction 520 552 - -
Amo01g1373 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Amo01g1373 552 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Amo01g1373 552 Coils Coil 496 516 - -
Amo01g1373 552 CDD RING-H2_synoviolin 289 330 - -
Amo01g1373 552 MobiDBLite consensus disorder prediction 520 540 - -
Amo01g1373 552 PANTHER - 1 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1373 Amo-Chr1 24345127 24350067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1373 1 546 C3H Transcription Factor Family AT3G16090 63.370 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1373 K10601 - gmx:100816441 841.262