Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1365 ATGTGCAGCGGTTCCAACAGGAAACCTACTCAAACTGGTTTGGTTATGGAGGATGATTATGGAAGAGAAGAAGGGCAGCATCAAAAGATATCTGCTTTGCTTGAACTTGCAGCTGCAGATGACCTAATTGGMTTCAAAGATGCAGTTGAGAAAGAGGGTTGTGATGTTGATGAGGCRGGGTCGTGGTTTGGAAGGAGGCTTGGCTCAAAGAAAGTGGGTTATGAAGAGAGGACACCACTTATGGTTGCTGCTATGTTTGGAAYCCTGAGAGTTTTGGCTTATATTCTTGGAACTGGCTGTGTTGATGTTAACAGGGCTAGTGGCTCGGATGGGGCTACTGCAATTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCCCTCGAGGTTGTCAAGCTTTTGCTTGAATCATCGGCAGATGTTAGTACTGTTGTTTCAAATGGTAACCGGCCTTGCGATTTGGTTGTCTCTGGGGCTAACTCTATCCCCAATTCAAGGAAGAGGATGCTGCAAGCCATGCTGGAAGGTACAGTTGGTACTGACAAGACGTTAGAGGATGTAGTTGGCCAAATCGAGGAACAACAAAGGGAAAACGTGGTGAACACGCCCCGTGTGTTGAAAGATGGGGCTGAGCGGAAGGATTATCCTGTTGATCACTCTCTTCCTGACATAAAGAACGGGATATATGGTACTGACGAGTTCAGGATGTATACATTCAAGGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACCGAGTGTCCCTTTGTTCACCCAGGGGAAAATGCCAGGCGACGCGATCCAAGGAAATACCATTATAGCTGTGTGCCTTGTCCTGAATTCCGTAAGGGGTCATGCAGCAAGGGAGATTTWTGCGAGTATGCACATGGTATTTTCGAGTGRTGGCTTCATCCTGCCCAGTACCGGACCCGGCTTTGCAAGGACGAGGGTGCATGTACAAGAAGAGTTTGCTTCTTTGCWCACAAGCCTGAGGAGCTTCGCCCCCTCTATGCTTCTACTGGTTCGGCTATGCCATCTCCTAGATCCTACTCCAGTGGTTCTTCATTGGATATGGGTCCAGTTAGCCCAATAACACTTGGTTCTCCATCRGTTATGATACCACCRGCMTCAACACCGCCTTTGACTCCTTCTGGATCTTCCTCTCCTCTCTCCGGATCCATGTGGCAGACTCAATCTAACATCCCAACCCTGCAGCTTCCTAGAAGCAGCAGATTGAAAACTGCTTTAGCTGCTAGCGATATTAATTCGGATACTGAATTGCTTATGCTAATGATGGATGAGATGACTGGTCTTTCCTCCCCTTCTGGTTGGAGAAATTCCTTGACTAATAATCCATCTTATCATTATTCTTTGGGCGATCGTGCTGCAGATCTAAATAGGCTTTCAGGAGTGARGCCTACTAACCTTGACGACACTTTTGGGTCTGTCGACCCGTCAATTTTGTCCAAATTCAATGGAATCTCATTTGATGCTGCAGGACCTCAGTTACATCTTCCAACTGGATTGCAGATGCGCCAGAACATGAATCAGCAGCTGCGAGGCTATTCTTCTGGCCTTCCTTCTCCGAAAGTGATTGGATCCCCAAAATCCAGGGTTGATCCATCAGGGGAACCGACTMCACTGGCTTTTAATCCAAGACTTGCTGCCTTTTCACAGCGGAGCCAGAGCTTCATCGAGCGCAGCATGGGAAACCGTCATTCTGAGGTTCCTTCGCTGGCCACCTCTGTGGCAGCAAAGCCTTCTTTGGCATATTCTCATTGGGGCTCTCATGATGGAAAATTGGACTGGCCGATGCAGGGRGAAGAGCTGAACAAGCTGAGGAAATCTGCTTCTTTTGGATTTCGAAGCAGCAGCAATATTCCCTCGCCCAGGGCTGCGACCAGAATGTCAGCTGCAAAAGTTGACGAGCCGGACGTGTCTTGGGTTAGCTCGCTTGTGAAGGACGCTCCGGCACAGCCAGAGCCCGGCCAGTTTAGRGCCGAAGATCAGCAACAGCTGCAATGTCATCTCAACAATGGAACAGATGTGATTCCAGCATGGTTGGAGCAAATGTACATTGACCAGGAGCAAKTGGTGGCATGA 2103 0.4831 MCSGSNRKPTQTGLVMEDDYGREEGQHQKISALLELAAADDLIGFKDAVEKEGCDVDEAGSWFGRRLGSKKVGYEERTPLMVAAMFGXLRVLAYILGTGCVDVNRASGSDGATAIHCAVAGGSAASLEVVKLLLESSADVSTVVSNGNRPCDLVVSGANSIPNSRKRMLQAMLEGTVGTDKTLEDVVGQIEEQQRENVVNTPRVLKDGAERKDYPVDHSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDXCEYAHGIFEXWLHPAQYRTRLCKDEGACTRRVCFFAHKPEELRPLYASTGSAMPSPRSYSSGSSLDMGPVSPITLGSPSVMIPPASTPPLTPSGSSSPLSGSMWQTQSNIPTLQLPRSSRLKTALAASDINSDTELLMLMMDEMTGLSSPSGWRNSLTNNPSYHYSLGDRAADLNRLSGVXPTNLDDTFGSVDPSILSKFNGISFDAAGPQLHLPTGLQMRQNMNQQLRGYSSGLPSPKVIGSPKSRVDPSGEPTXLAFNPRLAAFSQRSQSFIERSMGNRHSEVPSLATSVAAKPSLAYSHWGSHDGKLDWPMQGEELNKLRKSASFGFRSSSNIPSPRAATRMSAAKVDEPDVSWVSSLVKDAPAQPEPGQFRAEDQQQLQCHLNNGTDVIPAWLEQMYIDQEQXVA* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1365 700 MobiDBLite consensus disorder prediction 367 396 - -
Amo01g1365 700 ProSiteProfiles Ankyrin repeat region circular profile. 110 141 - -
Amo01g1365 700 SMART ANK_2a 75 105 IPR002110 GO:0005515
Amo01g1365 700 SMART ANK_2a 110 142 IPR002110 GO:0005515
Amo01g1365 700 Gene3D - 272 335 - -
Amo01g1365 700 Pfam Ankyrin repeats (3 copies) 54 141 IPR002110 GO:0005515
Amo01g1365 700 Gene3D - 8 190 IPR036770 -
Amo01g1365 700 SUPERFAMILY Ankyrin repeat 34 159 IPR036770 -
Amo01g1365 700 PANTHER UNKEMPT FAMILY MEMBER 20 694 IPR045234 -
Amo01g1365 700 SMART c3hfinal6 307 330 IPR000571 GO:0046872
Amo01g1365 700 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Amo01g1365 700 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Amo01g1365 700 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872
Amo01g1365 700 MobiDBLite consensus disorder prediction 1 21 - -
Amo01g1365 700 MobiDBLite consensus disorder prediction 520 544 - -
Amo01g1365 700 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 20 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1365 Amo-Chr1 24127169 24130550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1365 24 695 C2H2 Transcription Factor Family AT5G12850 38.472 3.66e-137 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo01g1365 Ank_2 6e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1365 - - aprc:113846970 942.184