Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1360 ATGGGTCTTCATCATGATTCTACTCATAATAATAACAACTCAGGCCTTCATCTTGTTCTAGGGTTGGCTCTGAGTTCCTCCTCTGATTCACCAACACAAGAAACCATAACTACCTCTACTAAGATCCCGCCGTACTCCTCTTCCTCCACCGTAACAACCGATGATGCTGAATTGCTATTACCGTCTCTTACTTTAGCTCTCTCCGGTCACGATGTGAACAAAAACAAAAACGATGATCCGCAAGAGCACCATAGGGTCCAGGTAGTCCCTACCAAGGCTAACAACAATAAGGTCTACAGTAGTGAGGACTACCCTTCTACTGGTGACGTGTCGGCACAGAATTCGCCTCACCACAGCGCCGTTTCGTCTTTCTCCAGCGGCTGCAGAAGAGGAGTCAAGAGAGAGAGGGATGTTAGCGCTAGCGACGAAGCCGAGGCGGAGGCGGAGGCCACGGAAATTGAGAGGCTTTCGTCGCGAATCAGCGACGAAGAGGAAGACGGTGGCACCACCGCCTCCGCCGCTGCCAGGAAGAAGCTTAGGCTCACCAAAGAACAATCTGCTCTGTTGGAAGACAGCTTCAAACAACATAGCACTCTCAATCCTAAGCAGAAGCAAGCTTTAGCGATGCAATTGAATCTACGGCCTCGACAAGTTGAAGTGTGGTTCCAGAACCGGAGAGCCAGAACAAAGCTGAAGCAGACGGAGGTAGATTGCGAGTTCCTAAAGAAGTGTTGTGAGACACTAACAGATGAGAATAGAAGGCTACAGAAAGAGCTTCAAGAGCTTAAGGCACTCAAACTGTCTCAGCCTTTGTACATGCCTCCCATGCCCGCCGCGACACTCACCATCTGCCCTTCTTGCGACCGGGCCGTTGCCATTGGCAGCGGTGGCAGCGCTTCCAATAACATCAAGAATACTCCTTTGATCTCCTTGGCCCCCAAGCCTCACCACTTCTTTAGTCCCTTCACCAATCCTTCCGCAGCATGTTGA 990 0.5071 MGLHHDSTHNNNNSGLHLVLGLALSSSSDSPTQETITTSTKIPPYSSSSTVTTDDAELLLPSLTLALSGHDVNKNKNDDPQEHHRVQVVPTKANNNKVYSSEDYPSTGDVSAQNSPHHSAVSSFSSGCRRGVKRERDVSASDEAEAEAEATEIERLSSRISDEEEDGGTTASAAARKKLRLTKEQSALLEDSFKQHSTLNPKQKQALAMQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLSQPLYMPPMPAATLTICPSCDRAVAIGSGGSASNNIKNTPLISLAPKPHHFFSPFTNPSAAC* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1360 329 MobiDBLite consensus disorder prediction 91 126 - -
Amo01g1360 329 MobiDBLite consensus disorder prediction 129 143 - -
Amo01g1360 329 Coils Coil 238 268 - -
Amo01g1360 329 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 16 329 - -
Amo01g1360 329 MobiDBLite consensus disorder prediction 150 172 - -
Amo01g1360 329 PANTHER - 16 329 - -
Amo01g1360 329 Coils Coil 146 166 - -
Amo01g1360 329 MobiDBLite consensus disorder prediction 26 48 - -
Amo01g1360 329 ProSitePatterns 'Homeobox' domain signature. 207 230 IPR017970 GO:0000981|GO:0006355
Amo01g1360 329 ProSiteProfiles 'Homeobox' domain profile. 172 232 IPR001356 GO:0003677
Amo01g1360 329 Gene3D - 167 237 - -
Amo01g1360 329 SUPERFAMILY Homeodomain-like 166 233 IPR009057 -
Amo01g1360 329 CDD homeodomain 176 233 IPR001356 GO:0003677
Amo01g1360 329 Pfam Homeobox associated leucine zipper 232 266 IPR003106 GO:0006355|GO:0043565
Amo01g1360 329 MobiDBLite consensus disorder prediction 91 172 - -
Amo01g1360 329 Pfam Homeodomain 176 230 IPR001356 GO:0003677
Amo01g1360 329 SMART halz 232 275 IPR003106 GO:0006355|GO:0043565
Amo01g1360 329 SMART HOX_1 174 236 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1360 Amo-Chr1 23825985 23829098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1360 13 329 Homeobox Transcription Factor Family AT4G37790 55.000 2.00e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo01g1360 Homeodomain 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1360 K09338 - gmx:100795135 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1360 01 23825985 23829098 Amo11g0904 11 25261491 25264783 hybridization
Amo05g0517 05 5972380 5974365 Amo01g1360 01 23825985 23829098 PCT
Amo01g1360 01 23825985 23829098 Amo05g0517 05 5972380 5974365 PCT