Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1357 ATGACCTTTACCACCCTTGAAGATGCTGAAAAATTTTACAGGAACTACGCCAAGGCTGCAGGTTTTTCTACAAGAGTTCGGAGCACAAATAGGAAGGGAAACGAGATTAAAAATCAATTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGATTGAGAAGACGAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAAGGAACTAAGCATGTCCATTCGRCGTACAATAGAGAATAAKGAGGAGGCCGACCGTCATATATGGGTTCCTATCTATCTGGATCACCACTTCTGGGCAGGGATGAGAAGCACCCAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTTTATCACCCGGAACAGCTCGCTTATTCAGTTCATCAAACAGTACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGTGTACACTCATCAAAAGTTTAGGGAAGTCCAAGCGCAATTCAGAGGAAAGGCGAATTGCATCACTAGATTAACAAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCATCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAAAGGGATACTGTGTCGTCACGCACTGAGCGTGTTAAGCTTTGAACAAGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTGATGGAGCCAAGAAGCAAGAGGTTTGACCAATTGGTTTTTTGTTTGCAAAATATTTGCGAATTTGCATCCGAATCGGAGGAGCTGACTGCAATTCTGCACCGTGCGTACGATAACGTCATGGCTGAGATGGAATCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCGTTACCGAGCTTCAAAGACCGCCAAGGATCCGAACAAGAGGACATCCAAAAAATAGGCTAGGTTCAAAGTTGGACAAACAGATTGCAAATGCCACAAAGAATAAGAAAACAAAAGTTTTAAGCGAGATAAACCTGTTTGATGCTGCATCAGTGGTGCATTCAAATTCCAGCCAATATCAAGGACATGTTATGAATTATCAGTTTAGGGTACCAGGAGCAGGGGATAACTCTTTGGGGTTCAGGGTTTTAGTCTCAAAGCATCATGGGGGGATAGATTTCGGGTCCCTGTAA 1410 0.4348 MTFTTLEDAEKFYRNYAKAAGFSTRVRSTNRKGNEIKNQLITCSREGKWKSKISPIEKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHKELSMSIRRTIENXEEADRHIWVPIYLDHHFWAGMRSTQRSESMHSFFNKFITRNSSLIQFIKQYDNCLGSREQAERESDAADFHTVIPCATKSSIEAQFQDVYTHQKFREVQAQFRGKANCITRLTNSALGYSVYEVGEQVSISIFNKFVVTYDSVAAEVKCQCLLFESKGILCRHALSVLSFEQVKRRHTHIKSSHDEPLMEPRSKRFDQLVFCLQNICEFASESEELTAILHRAYDNVMAEMESLKAKRKGTSSLSHEDANLESVTELQRPPRIRTRGHPKNRLGSKLDKQIANATKNKKTKVLSEINLFDAASVVHSNSSQYQGHVMNYQFRVPGAGDNSLGFRVLVSKHHGGIDFGSL* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1357 469 PANTHER OS03G0843700 PROTEIN 1 108 - -
Amo01g1357 469 Coils Coil 103 119 - -
Amo01g1357 469 Coils Coil 121 123 - -
Amo01g1357 469 SMART 26again6 267 294 IPR006564 GO:0008270
Amo01g1357 469 Pfam SWIM zinc finger 258 289 IPR007527 GO:0008270
Amo01g1357 469 Pfam FAR1 DNA-binding domain 11 96 IPR004330 -
Amo01g1357 469 ProSiteProfiles Zinc finger SWIM-type profile. 256 292 IPR007527 GO:0008270
Amo01g1357 469 PANTHER OS03G0843700 PROTEIN 124 293 - -
Amo01g1357 469 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 124 293 IPR031052 GO:0006355
Amo01g1357 469 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 108 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1357 Amo-Chr1 23788075 23790757 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo01g1357 FAR1 8.6e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1357 - - adu:110280503 575.474