Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1348 ATGAACCACCATGCTTCTCATCTTAGCAGCTATGGATTCTACTACGGAATTGAACCTGACAACAATAATAATAACGTTAGCCTGTATTCTGGTTTTCCAGTTATGCCCCTCAAATCTGATGGCACTCTCTACGGAATGGACCCTCTAATCAACAGGGCACACCCACAACAAGTGATTGGTTCAAGTTCAACGCCAAAACTGGAGAATTTGTTAGGTGGCGGCGATTTGATGGAGACACCTCATCACTATGAATGTAGTGTAGCGGAAGCAATGCCTCTCAGCCTGGACACCATTTTTCACAGAAACAACAACCACCAACCACACTTGTCATACTACCATGGGCTTCTAGAAGGTTCCAACAAGCAAAGTACGCAAGCTTCAGACACCAACGACAACAATCTCAAGAACTGGGGGGTGATTGAGGTGAATAATGGAGGTGGTGAATTATTAGGAGCTTCTTCAATTGGAACAATGAGTTATGGGGGGGACTTGCAGTCTTTGAGCTTGTCAATGAGTCCGAGCTCGCAATCGAGCTGCGTCACGAGTTCGCAGCAGCGTGTGAGTGTTGTTGGCAGCATGGATGCAACAAAGAAGAGGGGTTCTGAAAAGGTTCAACACAAGCATATTGTTCATAGAAAATCCATTGACACGTTTGGGCAAAGAACCTCACAGTATAGAGATATGAAGCACATCTATGGGACAATAGCTGCAAGAAAGAAGGCCAAAGTAGGAAAGGAAGGCAAGTTGGAAAATTATCAAAATCAACTTGAGGAAATGAAGAACATGACCAGACAAGAATATGTTGCTCATTTAAGAAGCCTTTTAAAATTTCATAGCACACAAGAGGAAGCAGCAGAAGCTTATGACATTGCAGCCATAAAATTCAGAGGGGTTAATGCCGTAACAAACTTTGACATAACAAGATATGATGTCGAAAAAATCATGGCAAGCAACAACCTTCTAAGCAGTGAGCTAGCACGGCGGAACAAAGAGGTTCTCGTTGGCAGAGCCGGCGAGTTTAGTAACAACCTTGATAACCAAAGCCAAGAATCGATTCTAATGCAAATCAGCCAGAGCCAGCCAAGACTGGAGGCAATAGACAATGTGTTTTTTCAAGAAGTGGAGGATCCGAGCAAGATTTATGCGCATTTGCATAATGCGCATGCATCGGATCCTTCTTCGCTGGCAACGAGCTTGAACAGCTCAAGAGAAGGTAGCCCTGAAAACAGGACAAGCTTGCCAATGCTCTCTGCCGGAGGAGTAGCTTCTACCAAGCTATTGGCAGCCGCGGCAACTATTCCGGTGCTTTCTTTGCCTCAGATGCCCGTTTTTGCCGCTTGGACAGATGCTTAG 1353 0.4494 MNHHASHLSSYGFYYGIEPDNNNNNVSLYSGFPVMPLKSDGTLYGMDPLINRAHPQQVIGSSSTPKLENLLGGGDLMETPHHYECSVAEAMPLSLDTIFHRNNNHQPHLSYYHGLLEGSNKQSTQASDTNDNNLKNWGVIEVNNGGGELLGASSIGTMSYGGDLQSLSLSMSPSSQSSCVTSSQQRVSVVGSMDATKKRGSEKVQHKHIVHRKSIDTFGQRTSQYRDMKHIYGTIAARKKAKVGKEGKLENYQNQLEEMKNMTRQEYVAHLRSLLKFHSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASNNLLSSELARRNKEVLVGRAGEFSNNLDNQSQESILMQISQSQPRLEAIDNVFFQEVEDPSKIYAHLHNAHASDPSSLATSLNSSREGSPENRTSLPMLSAGGVASTKLLAAAATIPVLSLPQMPVFAAWTDA* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1348 450 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 123 - -
Amo01g1348 450 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 278 360 - -
Amo01g1348 450 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 249 272 - -
Amo01g1348 450 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 131 228 - -
Amo01g1348 450 SUPERFAMILY DNA-binding domain 270 306 IPR016177 GO:0003677
Amo01g1348 450 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 6 123 - -
Amo01g1348 450 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 131 228 - -
Amo01g1348 450 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 278 360 - -
Amo01g1348 450 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 249 272 - -
Amo01g1348 450 Coils Coil 242 265 - -
Amo01g1348 450 Gene3D AP2/ERF domain 236 307 IPR036955 GO:0003700|GO:0006355
Amo01g1348 450 MobiDBLite consensus disorder prediction 390 415 - -
Amo01g1348 450 ProSiteProfiles AP2/ERF domain profile. 224 305 IPR001471 GO:0003700|GO:0006355
Amo01g1348 450 SMART rav1_2 259 311 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1348 Amo-Chr1 23047979 23052832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1348 9 450 AP2-EREBP Transcription Factor Family AT4G37750 34.054 9.10e-63 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1348 K09285 - tcc:18611333 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0541 05 6269454 6272483 Amo01g1348 01 23047979 23052832 PCT
Amo01g1348 01 23047979 23052832 Amo05g0541 05 6269454 6272483 PCT