Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1339 ATGCTTACTGGTCCACATCACCAATCCAATCTTAAAACGTATTATTCCTATGATCCCAAATGGGCTCATACTACCACTGATATGGAGCTTAAGCACCAACTTGGTCTTCTTTGCGTTATATTGCTTTTACCGGCACTAAGCATCGCCACTAATAATGACTATTGCCCTTTGAATTCTTATAAGAACTCTAGGGCATCCTATTATGGTACCCGTGATGGTTATGGGACTCCAAGTGGAGCATGTGGATTTGGCGAATATGGAAGGATGGTCAATGATGGCAAGGTTGCAGCGGTATCTGGGCTATGGAAAGGTGGAAGTGGCTGCGGTGCATGCTATCAGGTTAAATGTAAAGTACCAATATTGTGCAAAGTCAACGGGGTAACCGTGGTGGCAACAGATTATGGTGAGGGAGACAGAACAGATTTCATACTGAGCCCACGCGCTTTTGAGAGTTTGGGTGTGAGTCTTAATGCATCTGAAGAGCTCAAAAAATACGGTACTCTTGATATTGCATACAAGAGAGTTCCTTGCAATGGCAAGATTGTTATTAAGATCCACGAAAGTAGCAGCAACCCTGGATACTTTGCTATGGTGCTTCTCAGCCATGGTGGATTATACGATGTCACTAGTGTCGAATTCTGGGAGGATTCACGCAAACAATGGAGTCCATTGCGTAGAGCTTATGGGGCAGTGTTTGACTATGCTAACCCACCAAGGGGTCCACTCTTCTTGAGGTTCCAAGTGACTGGTTGTTATGGAGCTTATTGGCAAAAACTAAATAAACCTATCCCTGCTAATTGGCAGCCGAAAATGATTTTTAACTTTTGA 828 0.436 MLTGPHHQSNLKTYYSYDPKWAHTTTDMELKHQLGLLCVILLLPALSIATNNDYCPLNSYKNSRASYYGTRDGYGTPSGACGFGEYGRMVNDGKVAAVSGLWKGGSGCGACYQVKCKVPILCKVNGVTVVATDYGEGDRTDFILSPRAFESLGVSLNASEELKKYGTLDIAYKRVPCNGKIVIKIHESSSNPGYFAMVLLSHGGLYDVTSVEFWEDSRKQWSPLRRAYGAVFDYANPPRGPLFLRFQVTGCYGAYWQKLNKPIPANWQPKMIFNF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1339 275 Gene3D - 179 274 IPR036749 -
Amo01g1339 275 PRINTS Expansin/Lol pI family signature 59 74 IPR007118 GO:0005576
Amo01g1339 275 PRINTS Expansin/Lol pI family signature 98 116 IPR007118 GO:0005576
Amo01g1339 275 PRINTS Expansin/Lol pI family signature 165 181 IPR007118 GO:0005576
Amo01g1339 275 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576
Amo01g1339 275 PRINTS Expansin/Lol pI family signature 261 275 IPR007118 GO:0005576
Amo01g1339 275 SUPERFAMILY Barwin-like endoglucanases 51 178 IPR036908 -
Amo01g1339 275 Pfam Expansin C-terminal domain 182 249 IPR007117 -
Amo01g1339 275 Pfam Lytic transglycolase 99 164 IPR009009 -
Amo01g1339 275 PANTHER EXPANSIN-B3 29 272 - -
Amo01g1339 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 78 178 IPR007112 -
Amo01g1339 275 Gene3D - 45 178 IPR036908 -
Amo01g1339 275 PANTHER EXPANSIN-B1-LIKE PROTEIN 29 272 - -
Amo01g1339 275 SUPERFAMILY PHL pollen allergen 179 273 IPR036749 -
Amo01g1339 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 193 275 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1339 Amo-Chr1 22509077 22511265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1339 28 274 Expansin Gene Family AT4G17030 45.455 1.54e-70 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1339 - - adu:107485050 433.335