Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1336 ATGCGGTGCAGGACATGCTGCAAGAGCCGTGGCTTCGATTGCCAAACCCATGTGAAGAGCACTTGGGTTCCCGCTTCCAAGCGCCGCGAGAGGCAGCAACAACTCACCTCTATCCAACAACAACTTCTTGCTGCTGATGTTCTCAAGCGCCAAAGAGATCATGCCTAG 168 0.5417 MRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLTSIQQQLLAADVLKRQRDHA* 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1336 55 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 54 IPR007818 GO:0003700|GO:0006355
Amo01g1336 55 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 1 28 IPR006510 -
Amo01g1336 55 Pfam Domain of unknown function (DUF702) 1 47 - -
Amo01g1336 55 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1336 Amo-Chr1 22453153 22453320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1336 1 53 C2H2 Transcription Factor Family AT5G66350 75.926 1.80e-23 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo01g1336 DUF702 1.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1336 - - adu:107462205 99.3673