Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1329 ATGGGTGCTCCTAAACAGAAATGGACTGCAGAAGAAGAAGCAGCACTTAAAGCTGGAGTAGTCAAACATGGAGCAGGAAAATGGCGCACTATACTTACAGATCCAGAGTTTAGTGCCATCTTGCGCATGCGCTCCAATGTAGACCTCAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCCAAGCTAGCCCTTAAAAAGAACTTACTACTACCAGCCCCTAAAATCGACAACAATCATATGGCCTTGAGTACAGCAGTTCGACATGATGAAAATGTTCTCGAAACTAAGCCCCTAGCAATATGTGGTCTGTCATTGCCATCTCATAATTCAAAACAACAATTATCAAGGTTAGAAAGAAAATTATCAATCTCCTACAAACCTTGCAAAGTTACTGCGAACAAGACTGAAGCATATGGTGGATATTGGCAAAATAATCAAGGCTCTGAGAAAAGAAGATACTCTTCTTCCACTTTACTGCAGGAAGGGAGGCCCAGAGATTCTCCAGAAGCAGAGAAGAGTCATGATGTCAACATCCTTTCAAAATCC 570 0.4211 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLLLPAPKIDNNHMALSTAVRHDENVLETKPLAICGLSLPSHNSKQQLSRLERKLSISYKPCKVTANKTEAYGGYWQNNQGSEKRRYSSSTLLQEGRPRDSPEAEKSHDVNILSKS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1329 190 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Amo01g1329 190 Gene3D - 2 59 - -
Amo01g1329 190 PANTHER MYB TRANSCRIPTION FACTOR 1 126 - -
Amo01g1329 190 CDD SANT_TRF 6 57 - -
Amo01g1329 190 PANTHER SINGLE MYB HISTONE 4 155 190 IPR044597 GO:0003691
Amo01g1329 190 PANTHER SINGLE MYB HISTONE 4 1 126 IPR044597 GO:0003691
Amo01g1329 190 PANTHER MYB TRANSCRIPTION FACTOR 155 190 - -
Amo01g1329 190 SUPERFAMILY Homeodomain-like 2 68 IPR009057 -
Amo01g1329 190 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Amo01g1329 190 MobiDBLite consensus disorder prediction 148 170 - -
Amo01g1329 190 MobiDBLite consensus disorder prediction 148 190 - -
Amo01g1329 190 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Amo01g1329 190 SMART sant 4 59 IPR001005 -
Amo01g1329 190 MobiDBLite consensus disorder prediction 172 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1329 Amo-Chr1 22145198 22148980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1329 1 98 Single Myb Histone (SMH) Gene Family AT5G67580 70.707 5.65e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo01g1329 Myb_DNA-binding 3.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1329 K09422 - gmx:778043 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1329 01 22145198 22148980 Amo11g0969 11 28013070 28017270 hybridization
Amo05g0573 05 6648963 6653708 Amo01g1329 01 22145198 22148980 PCT
Amo01g1329 01 22145198 22148980 Amo05g0573 05 6648963 6653708 PCT