Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1323 ATGGATACGCTGTTTAGGCTAGATCCACCGTCCCTAAACTCCACAACAACATCATCAACCAACTCTCATCAAAATTATTATTATTATTATGACCAACACCAACTAGAGGAAGAAGCTGAAGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTATCCTCTTCTTCTTCAAAGCAACCAGAACAATATTACCCTTATTATAACCAATTACAACCCCACTACCATTTATTATCATCCACTACCACTACTCATCATGATTTATCGTCAACATCATTCTTACCACCCACTCCACCACCATCAGATTTCAACTTTGAATTCTCATCAGGCACGTGGGCACCCAACATCCTCCTCGACACCGCACGTGCCATCGCTGACAACAACACCACGCGACTGCATCAACTCCTATGGATGCTCAACGAGCTAAGCTCTCCATACGGCGACACAAACCAAAAACTCGCCGCGTATTTTCTTCAAGCCTTGTTCAGCCGCATAACCACCGTCGGCGAACGAACCTACCGAACCTTAACGTTAGCTTCGGACAAGACTTGCTGTTTCGAGTCCACCAGGAAGACGGTTCTCAAGTTCCAGGAGGTTAGTCCCTGGACCACGTTTGGACACGTGGCGTCCAATGGCGCCATCTTAGAGGCTCTCGATGGGGAGCTCAACTTGCACATTGTGGATTTCAGCAACACGTACTGCACACAGTGGCCAACGCTTCTTGAAGCCTTGGCCACTCGTAGCGACGACACCCCGAACCTCCGCTTAACCACCGTCGTCACCACCAGACCTGGTGACTCTGGCGACGCTGTTCAGAGGGTCATGAAGGAAATAGGTACAAGGATGGAGAAATTTGCGAGGCTAATGGGAGTTCCGTTCAAATTCAACGTCGTTTGCCACGTCGGCGATCTCTCCAATCTCAACTTCGGCGATTTGGACATCAAGAACGAGGAGGCCTTAGCCATCAACTGCGTGAACACGCTGCACGCGATCACACCCGTCGGGAACCACCGTGACACGTTGATATCCTCGCTGGCGAGGCTAAACCCTCGGATCGTGACGGTGGTGGAAGAAGAAGCGGATCTGGACGTTGGCGTCGAAGGCCAGGAGTTCCTTAAAGGGTTCGAGGAATGCGTGAAGTGGTTTAGGGTTTACATGGAGGCGCTGGATGAGAGCTTTACGAGGACGAGTGGGGAGAGGCTGATGCTGGAAAGGGCGGCGGGGAGGGCGATTGTGGACCTGGTGGCGTGTACGGCGGCGGAATCGGTGGAGCGGAGGGAGACGGCCGTGAAATGGTCGCAGAAAATGAGGGAAGGTGGAGGGTTGAATAGGATGCCGTTTAGCGAGGAGGTGTGTGATGACGTCAGAGCATTGCTGAGAAGGTATAGGGAAGGGTGGTCGATGGCAGAGTGTTCCGATGACGGAGTATTTCTTTGTTGGAAGGACCAGCCGGTGGTGTGGGCCAGTGCATGGAAGCCGTAG 1482 0.5175 MDTLFRLDPPSLNSTTTSSTNSHQNYYYYYDQHQLEEEAEEECFNFFMDEEDLSSSSSKQPEQYYPYYNQLQPHYHLLSSTTTTHHDLSSTSFLPPTPPPSDFNFEFSSGTWAPNILLDTARAIADNNTTRLHQLLWMLNELSSPYGDTNQKLAAYFLQALFSRITTVGERTYRTLTLASDKTCCFESTRKTVLKFQEVSPWTTFGHVASNGAILEALDGELNLHIVDFSNTYCTQWPTLLEALATRSDDTPNLRLTTVVTTRPGDSGDAVQRVMKEIGTRMEKFARLMGVPFKFNVVCHVGDLSNLNFGDLDIKNEEALAINCVNTLHAITPVGNHRDTLISSLARLNPRIVTVVEEEADLDVGVEGQEFLKGFEECVKWFRVYMEALDESFTRTSGERLMLERAAGRAIVDLVACTAAESVERRETAVKWSQKMREGGGLNRMPFSEEVCDDVRALLRRYREGWSMAECSDDGVFLCWKDQPVVWASAWKP* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1323 493 PANTHER PROTEIN SHORT-ROOT 1 492 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Amo01g1323 493 ProSiteProfiles GRAS family profile. 104 492 IPR005202 -
Amo01g1323 493 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 492 IPR005202 -
Amo01g1323 493 Pfam GRAS domain family 116 492 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1323 Amo-Chr1 22001887 22003924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1323 26 493 GRAS Transcription Factor Family AT4G37650 59.839 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo01g1323 GRAS 5.7e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1323 - - gmx:100778524 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1323 01 22001887 22003924 Amo11g0978 11 28254565 28256602 hybridization
Amo05g0578 05 6691327 6694131 Amo01g1323 01 22001887 22003924 PCT
Amo01g1323 01 22001887 22003924 Amo05g0578 05 6691327 6694131 PCT