Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1312 ATGGAGAATTATTTAAATGAGAATTTTGGAGGTGTGAAATCCAAGAACTCTGATGGAGAATCTCTTGGTAAATGGAGAAAACTATGTGGGGTGGTCAAGAACCCCAAAAGACGCTTTCGTTTCACTGCCAATCTCTCTAAGCGAGAAGAAGCAGCAGCTATGCGTCGCACTAATCAGCTGCAAGGTGTGCAACTTGGTGATTACACTGTACCACAGCATGTTAAAGCTGCAGGTTTTCAAATAGATGCAGAGGAACTTGGGTCTATAGTTGAAGGACATGACGTAAAGAAGTTGAAATTCCATGGTGGGGTTGAAGGCATTGCAGAAAAGCTTTCAACATCAACAGCCAAGGGTCTTAGTGACGGTTACGAATCGCAGCGTAGGAGAGAGGAGATTTTCGGAGTGAACCAATTCGCTGAAGCTGAACTTCGGAGCTTCTGGGTTTACGTTTTCGAAGCCCTTCATGACATGACACTCATGATTCTTGGAGTGTGTGCCTTTGTGTCGCTGATAGTTGGAATAGCAACAGAGGGATGGCCAAAGGGTGCTCACGATGGTCTAGGAATCGTCGTGAGCATCTTATTGGTGGTCTTTGTAACCGCCACAAGTGACTACCGCCAGTCCTTACAGTTCAAAGATTTAGACAAGGAGAAAAAAAAGATTTCAGTTCAGATAACAAGAAACGGTTACAGGCAGAAAATGTCAATTTACAGTTTACTCCCTGGGGACATGGTCCATCTTGCCATTGGAGACCAAGTCCCTGCCGACGGACTCTTCGTTTCCGGATTCTCCGTCTTGATTGACGAGTCGAGTTTAACCGGCGAGAGCGAACCGGTTATGGTTACTTCTCAGAACCCGTTTCTTCTTTCGGGAACAAAAGTCCAAGATGGATCCTGTACCATGATGGTTACAACGGTGGGAATGAGAACACAGTGGGGGAAGTTAATGGCGACGCTAAGCGAAGGTGGCGATGACGAGACGCCGTTGCAGGTGAAGCTGAATGGAGTGGCAACGATTATAGGAAAGATAGGACTGTTTTTCGCGGTGATTACTTTCGTTGTGTTGGTGAAGGGACTAATGGGGAGAAAACTTGAAGAAGGGAGGTTTTGGTGGTGGTCTACGGAGGATTGCTTGGAGATGCTGGAATTCTTCGCCATTGCAGTTACGATTGTTGTTGTTGCTGTGCCGGAGGGGCTGCCGTTGGCAGTTACGTTGAGCCTTGCGTTTGCGATGAAGAAGATGATGAATGACAAGGCTCTTGTGAGACACCTGGCAGCTTGCGAGACCATGGGATCCGCCACAACTATTTGTAGTGACAAGACTGGAACCCTAACAACTAACCGCATGACAGTTGTCAAAACATGCATTTGTATGAAGGTTAATGAAGTGAGCAACAATAAGGTGTCGCAACTCCCAGATTTGGCATTAAAGCTGCTACTTGAGTCAATATTCAACAACACCGGCGGTGAAGTTGTGGTTAACAAAATGGGGAAGCGTGAGATTTTGGGAACTCCAACAGAATCAGCGATTCTAGAATTCGGGCTCTCGCTAGGTGGGGACCCACAAGGCGAGAGAGAAAAATGCAAGCTTATAAAAGTTGAGCCATTCAACTCCGAAAAGAAAAGAATGGGCGTGGTTGTGAAGGTCCAAGATGGAGGAGGCTTAAGAGCACATAGCAAAGGTGCTTCTGAAATAGTGCTTGCATCTTGTGACAAAGTGATAAATTCAAATGGTGAGATTGTGTCCCTTGATGAAGAAGCAATGAACCATCTTAGCAAGACAATAAACCAGTTTGCTGGTGAGGCACTTAGGACTCTGTGCCTTGCTTATATGGAATTGGAAAATGGGTTCTCTCCAGAGGATCCTATTCCTTCTTCTGGGTACACTTGTATAGGAGTTGTTGGTATCAAAGATCCCGTTCGTCCGGGTGTTAAGGAATCTGTTGCAGTGTGTCGGTCCGCCGGAATAGTAGTGAGGATGGTCACCGGAGATAACATTAATACGGCAAAGGCTATTGCCAGAGAGTGTGGAATTTTAACAGATGATGGCATAGCCATTGAAGGTCCTGAATTTAGACAAAAAACTCAGGAGGAATTGTTTGAACTCATTCCCAAACTTCAGGTGATGGCTAGATCCTCACCTTTAGATAAGCATACATTGGTGAAGCAGTTGCGCACAACTTTTGGAGAGGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCCCCAGCCCTTCATGAAGCTGATATTGGACTTGCAATGGGAATTGCTGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTCATAATTTTAGACGATAACTTCTCCACAATAGTGACAGTAGCAAAATGGGGACGTTCAGTTTACATAAATATTCAAAAATTTGTACAGTTTCAGCTTACCGTTAATGTGGTAGCATTACTAGTGAACTTCTCATCAGCTTGTTTCACAGGAAATGCACCACTGACGGCGGTTCAACTTTTGTGGGTGAACATGATAATGGACACACTAGGAGCACTTGCACTTGCAACGGAGCCTCCAAATGATGATTTGATGAAGCGTGCACCTGTTGGAAGGAAAGGAGATTTCATCAGCAATATCATGTGGAGAAATATCTTGGGACAATCAGTGTATCAAGTTGTTGTCATTTGGCTTCTTCAGACTGTGGGAAGATGGTTCTTCTTTCTCTGGGGCCCAAATCCTGATGTTGTCTTAAACACTCTTATTTTCAACACATTTGTCTTCTGTCAGGTTTTCAATGAGATAAACTCTCGAGAAATGGAGGAAGTAGATGTGTTAAAGGGCATGTGGGAAAATCAGGTGTTTGTGGCTGTGATTAGTTGCACTGTGGTGTTTCAAATCATAATAGTTGAGTACTTGGGAACCTTTGCAAACACAACACCTCTCTCTTTTGTACAATGGCTCTTTTGTTTAGGGGTTGGGTATATGGGCATGCCAATCGCAGCAAAGTTAAAAGAGATCAATGTTGAATGA 2994 0.4442 MENYLNENFGGVKSKNSDGESLGKWRKLCGVVKNPKRRFRFTANLSKREEAAAMRRTNQLQGVQLGDYTVPQHVKAAGFQIDAEELGSIVEGHDVKKLKFHGGVEGIAEKLSTSTAKGLSDGYESQRRREEIFGVNQFAEAELRSFWVYVFEALHDMTLMILGVCAFVSLIVGIATEGWPKGAHDGLGIVVSILLVVFVTATSDYRQSLQFKDLDKEKKKISVQITRNGYRQKMSIYSLLPGDMVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTSQNPFLLSGTKVQDGSCTMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFVVLVKGLMGRKLEEGRFWWWSTEDCLEMLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMKVNEVSNNKVSQLPDLALKLLLESIFNNTGGEVVVNKMGKREILGTPTESAILEFGLSLGGDPQGEREKCKLIKVEPFNSEKKRMGVVVKVQDGGGLRAHSKGASEIVLASCDKVINSNGEIVSLDEEAMNHLSKTINQFAGEALRTLCLAYMELENGFSPEDPIPSSGYTCIGVVGIKDPVRPGVKESVAVCRSAGIVVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFRQKTQEELFELIPKLQVMARSSPLDKHTLVKQLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACFTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRAPVGRKGDFISNIMWRNILGQSVYQVVVIWLLQTVGRWFFFLWGPNPDVVLNTLIFNTFVFCQVFNEINSREMEEVDVLKGMWENQVFVAVISCTVVFQIIIVEYLGTFANTTPLSFVQWLFCLGVGYMGMPIAAKLKEINVE* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1312 997 Gene3D - 18 64 - -
Amo01g1312 997 PANTHER CALCIUM-TRANSPORTING ATPASE 3 995 - -
Amo01g1312 997 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 93 996 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Amo01g1312 997 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 529 680 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g1312 997 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 370 459 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g1312 997 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 705 817 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g1312 997 Pfam Cation transporter/ATPase, N-terminus 101 169 IPR004014 -
Amo01g1312 997 SUPERFAMILY HAD-like 435 840 IPR036412 -
Amo01g1312 997 Gene3D - 124 320 - -
Amo01g1312 997 Pfam Cation transporting ATPase, C-terminus 820 988 IPR006068 -
Amo01g1312 997 Pfam E1-E2 ATPase 220 415 - -
Amo01g1312 997 SFLD Haloacid Dehalogenase 419 787 - -
Amo01g1312 997 PANTHER CATION TRANSPORTING ATPASE 3 995 - -
Amo01g1312 997 SUPERFAMILY Calcium ATPase, transmembrane domain M 101 992 IPR023298 -
Amo01g1312 997 ProSitePatterns E1-E2 ATPases phosphorylation site. 439 445 IPR018303 -
Amo01g1312 997 SFLD p-type atpase 419 787 IPR044492 -
Amo01g1312 997 SUPERFAMILY Calcium ATPase, transduction domain A 223 317 IPR008250 -
Amo01g1312 997 SMART Cation_ATPase_N_a_2 98 174 IPR004014 -
Amo01g1312 997 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
Amo01g1312 997 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 443 644 IPR023299 GO:0000166
Amo01g1312 997 Gene3D - 447 639 IPR023299 GO:0000166
Amo01g1312 997 PRINTS P-type cation-transporting ATPase superfamily signature 437 451 - -
Amo01g1312 997 PRINTS P-type cation-transporting ATPase superfamily signature 654 664 - -
Amo01g1312 997 PRINTS P-type cation-transporting ATPase superfamily signature 268 282 - -
Amo01g1312 997 PRINTS P-type cation-transporting ATPase superfamily signature 735 754 - -
Amo01g1312 997 PRINTS P-type cation-transporting ATPase superfamily signature 759 771 - -
Amo01g1312 997 PRINTS P-type cation-transporting ATPase superfamily signature 632 643 - -
Amo01g1312 997 Pfam Cation transport ATPase (P-type) 495 573 - -
Amo01g1312 997 CDD P-type_ATPase_Ca_PMCA-like 128 868 - -
Amo01g1312 997 PRINTS H+-transporting ATPase (proton pump) signature 591 609 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g1312 997 PRINTS H+-transporting ATPase (proton pump) signature 767 792 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g1312 997 PRINTS H+-transporting ATPase (proton pump) signature 735 751 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g1312 997 Gene3D - 152 983 - -
Amo01g1312 997 Gene3D - 434 780 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1312 Amo-Chr1 21797670 21804325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1312 1 996 Primary Pumps ATPases AT4G37640 77.833 0.0 1605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1312 K01537 - gmx:100776926 1698.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0585 05 6757727 6763421 Amo01g1312 01 21797670 21804325 PCT
Amo01g1312 01 21797670 21804325 Amo05g0585 05 6757727 6763421 PCT