Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1286 ATGAGTTGCAACGGTTGCCGAGTTCTCCGAAAGGGTTGCAGCGAGACATGCATGTTGCGCCCTTGCTTGCAGTGGATCGAGACACCCGAGGCCCAAGGACACGCCACCGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGCCTCATGTCTTTCATTTCCAATGTACCGGAGGCCCAAAGACCCGCTCTGTTTCAGTCACTGCTGTTTGAAGCATGTGGAAGAACCGTGAATCCGGTTAATGGTGCTGTGGGGCTCTTGTGGACGGGGAACTGGCACGTGTGCCAGGCGGCAGTGGAGACGGTGCTCCGCGGAGGCACGTTGAGGCCCTCGCCGGAGTTTATGGGGATGGAATCGGCGGGTCCGGTGGTGGCCACCGACGAAGCATCGGAGGCAGAGGTCACGTGCGGTGACATATGGAAGAAGGTTCGAGATCCGAACCCGAGTTGCAGGTTCACAAGCTCACGGTCTACACGTGTTGCTGCCGGCGCCGCCGGGAAGCGTAAGCGGCTGGAGGAGGTGACGAAGGTCCAGACGGCGGCTGATCTTGATCTTCGTCTGACGCCGATCTTCCTTCAGAAGATCGCCGATTACCGGCGCCGTCCAGGATCGCCGTCGATGACGTCGGAGGAGTCCGTGACGACCACGGCGGAGATTGGAGGAGATCAGTGGGGTCACAGCGGTGAACGGAAAGTTCTCAACCTTTTCATTTGA 711 0.5977 MSCNGCRVLRKGCSETCMLRPCLQWIETPEAQGHATVFVAKFFGRAGLMSFISNVPEAQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPSPEFMGMESAGPVVATDEASEAEVTCGDIWKKVRDPNPSCRFTSSRSTRVAAGAAGKRKRLEEVTKVQTAADLDLRLTPIFLQKIADYRRRPGSPSMTSEESVTTTAEIGGDQWGHSGERKVLNLFI* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1286 236 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Amo01g1286 236 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Amo01g1286 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 236 - -
Amo01g1286 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1286 Amo-Chr1 20871237 20872804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1286 1 236 AS2 family AT4G37540 57.937 3.01e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo01g1286 LOB 4.5e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1286 01 20871237 20872804 Amo11g1017 11 29582127 29583335 hybridization
Amo01g1286 01 20871237 20872804 Amo05g0681 05 8155350 8157243 PCT