Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1285 ATGAGTAGTGGAATTGTGTGGTCACTCGCATTATTATTGAGTCTCGTGTGTCTTAATCCATTTCAATTATCTTCGGCACAGCTTAGTCCAAACCATTACGCTAATATCTGCCCCAATGTTGAATCCATCGTTAGACAAGCAGTTCAAAAGAAATTCCAACAAACCTTTGTAACTGTTCCTGCCACGCTCCGTCTCTTCTTCCACGACTGCTTTGTCCAGGGTTGTGATGCTTCAGTGTTGGTAGCATCAACAGGGGCAAACCAAGCAGAGAAGGATCATTCGGATAATTTGTCATTGGCTGGAGATGGATTTGACACAGTTATCAAAGCAAAAGCAGCGGTTGATGCTGTTCCTCAGTGCAGAAACAAAGTCTCCTGTGCTGATATTCTTGCTTTGGCAGCCCGTGATGTCGTTGTTCTGGCTGGTGGACCTTCATACACGGTTGAATTGGGAAGATTTGATGGGTTAGTATCAAGAGCTTCTGATGTAAATGGAAGGCTACCACAACCAGGCTTCACCTTGAATCAGCTCAATTCTCTCTTTGCCGCAAATGGCCTCACCCAAACTGACATGATTGCCCTCTCAGGTGCACACACCCTTGGATTCTCGCACTGCAACAGGTTCTCAAACAGAATCTACAGCACCCCAGTGGACCCCACACTGAACAAGCAATACGCTGCACAGCTCCAACAAATGTGCCCAAGAAACGTGGATCCAAGAATCGCCATCAACATGGATCCAAACACACCTCGCACCTTCGACAACTTTTACTACAAGAACCTTCAAAACGGACAGGGTCTCTTCACCTCTGATCAGATCCTCTTCGCTGATCAGAGGTCTAGACCCACCGTTAATTCTTTTGCCTCCAATGCTAATGTCTTCAACTCCAACTTCGTTGCTGCAATGACCAAATTGGGTCGCGTTGGGGTTAAGACAGCCCGTAACGGAAAAATTCGTACGGATTGTTCCGTTCTTTGA 978 0.4632 MSSGIVWSLALLLSLVCLNPFQLSSAQLSPNHYANICPNVESIVRQAVQKKFQQTFVTVPATLRLFFHDCFVQGCDASVLVASTGANQAEKDHSDNLSLAGDGFDTVIKAKAAVDAVPQCRNKVSCADILALAARDVVVLAGGPSYTVELGRFDGLVSRASDVNGRLPQPGFTLNQLNSLFAANGLTQTDMIALSGAHTLGFSHCNRFSNRIYSTPVDPTLNKQYAAQLQQMCPRNVDPRIAINMDPNTPRTFDNFYYKNLQNGQGLFTSDQILFADQRSRPTVNSFASNANVFNSNFVAAMTKLGRVGVKTARNGKIRTDCSVL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1285 325 PANTHER - 10 325 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 ProSiteProfiles Plant heme peroxidase family profile. 27 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 Pfam Peroxidase 44 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Amo01g1285 325 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Amo01g1285 325 Gene3D - 31 324 - -
Amo01g1285 325 Gene3D Peroxidase, domain 2 168 305 - -
Amo01g1285 325 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 CDD secretory_peroxidase 27 324 IPR033905 GO:0004601|GO:0042744
Amo01g1285 325 SUPERFAMILY Heme-dependent peroxidases 27 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo01g1285 325 PANTHER PEROXIDASE 10 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1285 Amo-Chr1 20780947 20784698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1285 5 322 Peroxidase AT5G67400 67.081 1.76e-159 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1285 K00430 - gmx:100817540 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1285 01 20780947 20784698 Amo11g1018 11 29718989 29722289 hybridization
Amo01g1285 01 20780947 20784698 Amo05g0679 05 8059307 8067351 PCT