Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1284 ATGGTTAATGAGACTCTGTTGTTGGTATTTGTGGTGGTGGTGGTGATAATAGCGGCAGAGGTTGTGGGATCTGCTACAGAGGCATCTAATGGAAGACCGTATGTTCTTAAGACAATAGTTCAGTTTGCGATTGGAAAGGCTTGTGAAGAGGGAAAATGGGCGGCGGAGATTTGCAATCCAAGAAAAGGTGTTCGCGTTTGGGTTGGAACCTTCAACACCACCAAAGAAGCCGCTAGAGCCTATGACAGAGAAGGTCGTAAGATTCACGGAAAGAAAGCTAAAGTGAACTTCCCCAACGAGGATGACGAACACTCCATTCAACAATCTCGCAACATTATTCCAAACATTTCTCCTCCTCTGTATCAATATGGTGATGCCACAACAACAACATGA 393 0.4478 MVNETLLLVFVVVVVIIAAEVVGSATEASNGRPYVLKTIVQFAIGKACEEGKWAAEICNPRKGVRVWVGTFNTTKEAARAYDREGRKIHGKKAKVNFPNEDDEHSIQQSRNIIPNISPPLYQYGDATTTT* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1284 130 Gene3D AP2/ERF domain 46 99 IPR036955 GO:0003700|GO:0006355
Amo01g1284 130 SUPERFAMILY DNA-binding domain 49 99 IPR016177 GO:0003677
Amo01g1284 130 PANTHER EREBP TRANSCRIPTION FACTOR 51 114 - -
Amo01g1284 130 SMART rav1_2 51 104 IPR001471 GO:0003700|GO:0006355
Amo01g1284 130 PANTHER DNA-BINDING DOMAIN 51 114 IPR044808 GO:0003700|GO:0009873
Amo01g1284 130 Pfam AP2 domain 51 83 IPR001471 GO:0003700|GO:0006355
Amo01g1284 130 ProSiteProfiles AP2/ERF domain profile. 35 98 IPR001471 GO:0003700|GO:0006355
Amo01g1284 130 CDD AP2 51 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1284 Amo-Chr1 20777610 20778002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1284 51 100 AP2-EREBP Transcription Factor Family AT1G72360 72.000 2.79e-20 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo01g1284 AP2 2.3e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1284 K09286 - gmx:100819416 114.39