Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1280 ATGACAGATATGGCAAGCTTTCTTGATTTGGTTGTAGCTTCTCCTGTGGAGGATTACTTTTTATACATTGATGATTTGAAAAATCCTGATAAGGAAGAAGCTGAGAAAATTACACAACCATATTTAGATGCTCTTGGTGAAGACTATTCTGTTTGTTGCCAAGGAACTGCTTTTTTTCCTTTGCAAAGCTACATGAACCATTCTTGTAGTTCTAATGCCAAAGCCTTCAAGAGAGACGAGGATAGGGATGGCCAAGCAACCATAATCGCAGTAAGGCCGATTCGAAAAGGAAAAGAGGTTGGTTTTACCGCTGGATCAGCTTTAGAGCATATTAAGAGGACTCATGAGGCTGTAAATAAGAAAGAGTCCAAACATATTTCTGTAGTAGTGTCACTAATTAGTAATGCTTCTAATAGCAATGAGCAACATGGCATGGAGATCAATTCTGCTCGTGTTGCAGTAGAGGAAGACGTGGCAAAGAACAGCAAGGATCTCTTTGAGCAGTTTGATGCTGCGTCTCTGAAGGCTCCTTCTCTGCATTCTACCTCTCCCAAAGCTACTTCTTCCAGGGTTGTTCATCACCACAAGGAGGTTGGCTATAGACCGGAACCAACTTTAAGGAACCAACATGCCGCGGCATCTAAGATCCAGGCTATTTATAGAGGCTATATGCAAACTCAGATCAGGCTATGGTTTGGAATCAGCTCAAAGCAAGATCCTTCCAGTAAGTTTCGAATCATTGAACCAAAGAAAGCAAAGAATTTGTCAATTCTGTTGAAAGCATTGAATGTAACACTAGAAGAAGTTCGTGATGCACTCCTTGAAGGTGGGTCTCAAAATCCATGGAGATTAATGGCATCTGAAGTGGTTGAGCATCATTACGTGAATGCAAGTGATCTCAACTTGTTGAAGGCAAATGAAGCTGAAGCGTCCTTAACTGGAAGGGGTGCCTACACTCTTATGGTAGGACTCACCCTTATTCAAACTGCTGCCGCTAAATATAAAGCACACGTCTCAGAAGAACAGCTGATCAAGAAAATCAAAGTGTATGCTGATGACATGCTGAACATCCCAGGCTTTTTTGGATGGAGAGCGAGCTACAAGATATTTGACAAGAAGCTTGCAGACAAGATTGCAGCTTCTGGTTACTATGTGGTTGTTCTGGACTTCTTTTATAGTGAACCCTATGATCCTCAGAATACTAATAGACCTTTAGGAGAGTGGCTAAAAGATCATAGAACGAATGTATGGTGTGGCCCTGGAATTGAATTCACATTAGATCATGCTTCTGCTTATGTGGATTGTGTGGTGGCAAGGAAGAATGCTTCTTCAAGAAGGAACCTTGATGCTGTTGAGAGAGCAACACATAGGGAAGAG 1377 0.4176 MTDMASFLDLVVASPVEDYFLYIDDLKNPDKEEAEKITQPYLDALGEDYSVCCQGTAFFPLQSYMNHSCSSNAKAFKRDEDRDGQATIIAVRPIRKGKEVGFTAGSALEHIKRTHEAVNKKESKHISVVVSLISNASNSNEQHGMEINSARVAVEEDVAKNSKDLFEQFDAASLKAPSLHSTSPKATSSRVVHHHKEVGYRPEPTLRNQHAAASKIQAIYRGYMQTQIRLWFGISSKQDPSSKFRIIEPKKAKNLSILLKALNVTLEEVRDALLEGGSQNPWRLMASEVVEHHYVNASDLNLLKANEAEASLTGRGAYTLMVGLTLIQTAAAKYKAHVSEEQLIKKIKVYADDMLNIPGFFGWRASYKIFDKKLADKIAASGYYVVVLDFFYSEPYDPQNTNRPLGEWLKDHRTNVWCGPGIEFTLDHASAYVDCVVARKNASSRRNLDAVERATHREE 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1280 459 Coils Coil 252 272 - -
Amo01g1280 459 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 8 101 IPR044237 GO:0008168
Amo01g1280 459 SUPERFAMILY Formin homology 2 domain (FH2 domain) 230 278 - -
Amo01g1280 459 Gene3D SET domain 26 103 IPR046341 -
Amo01g1280 459 Gene3D - 234 313 - -
Amo01g1280 459 SUPERFAMILY SET domain 38 102 IPR046341 -
Amo01g1280 459 Pfam SET domain 49 100 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1280 Amo-Chr1 20696392 20700835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1280 240 291 FH2 protein (formin) Gene Family AT3G25500 48.077 7.13e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo01g1280 SET 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1280 - - aip:107613919 182.57