Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1268 ATGACAGAAACTACAATTCTACCTGTTGGATATAGGTTTCGTCCAACAGAAGAACTTTTAGTTCACTATCTCAATAACAAGCATTTGAGAAATGATGCACAGATCAAGAACACTGTTTCCCAAATTGATCTTTATAACTTTGATCCTTGGGATTTGCCAGAACAATCGAAGGTGAAATGGGATGATCAAGAATGGTTTTTCTTCAATGAATTGAAACACATAAAAAACAAGCGGTGTAACAGAAAAACTAACGCCGGTTATTGGAAGATCACCGGAAAAGAGCGGATCGTCAAAAGAACAGGGATAGACAATGTGATAGGTACAAAAAGAACACTAGTTTTCTATAAGCGTCCACAGTGTCAAAACCAATTGGGTTCTTCATGA 384 0.3698 MTETTILPVGYRFRPTEELLVHYLNNKHLRNDAQIKNTVSQIDLYNFDPWDLPEQSKVKWDDQEWFFFNELKHIKNKRCNRKTNAGYWKITGKERIVKRTGIDNVIGTKRTLVFYKRPQCQNQLGSS* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1268 127 Pfam No apical meristem (NAM) protein 8 118 IPR003441 GO:0003677|GO:0006355
Amo01g1268 127 PANTHER FACTOR, PUTATIVE-RELATED 8 119 - -
Amo01g1268 127 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 119 - -
Amo01g1268 127 SUPERFAMILY NAC domain 4 120 IPR036093 GO:0003677|GO:0006355
Amo01g1268 127 Gene3D NAC domain 16 125 IPR036093 GO:0003677|GO:0006355
Amo01g1268 127 ProSiteProfiles NAC domain profile. 7 127 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1268 Amo-Chr1 20274658 20275183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1268 7 116 NAC Transcription Factor Family AT1G33060 48.673 3.78e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo01g1268 NAM 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1268 - - ahf:112702353 227.254