Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1263 ATGTGCAAAAAAAGTCACTACACACGCATCAAATATGCGCACGAACCACCATCACTACTCTTCCGCTTCTTGCTAGTGTGCGCACTTGTTGCCTTGCGTGCGCCGGTAGCGCAATACCCTACCCTACGCACCCCCACCACGCACCTCACTAACGACACCACCACCATCCTCCACCACCACCATCACCCTTACATAAATCGCAGCAGAGCTCAGATCTCGCGTTCTTCCAATCGCTCACGCATGTCGAAGGCGCGTGTCTACACCGACGTCAACGTTCTCCGCCCCAAAGAGTACTGGGACTATGAGTCCCTCAACGTTCAGTGGGGTGATCAAGATGATTATGAGGTTGTAAGAAAAGTGGGAAGGGGGAAGTATAGTGAGGTTTTTGAAGGCATAAATGTTAACAGCAACGAGCGGTGTATAATCAAGATCCTCAAGCCTGTCAAGAAGAAGAAGATTAAGAGAGAGATAAAAATACTTCAGAACCTCTGTGGGGGCCCAAATATTGTCAAGCTTCTTGATATTGTTAGAGATCAACACTCTAAAACTCCTAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGGCCTTGGACTACTGTCATTCACAAGGCATAATGCATAGAGACGTGAAGCCTCATAATGTTATGATAGATCATGAATTACGAAAACTTCGATTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAGTATAATGTTCGTGTGGCATCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGGAAGGAGCCTTTCTTTTATGGTCATGACAATCATGATCAGCTTGTCAAAATAGCCAAGGTACTTGGGACTGATGAATTGAATGCATACCTGAATAAGTATCACCTGGAGCTTGATCCTCAACTTGATGCACTTGTTGGAAGGCACAGTCGCAAACCCTGGTCAAAATTCATCAATGCAGATAACCAGCATCTTGTGTCTCCAGAGGCTATTGATTTTCTTGATAAGCTCCTTCGGTATGATCACCAGGACAGGCTAACGGCAAGAGAAGCAATGGCACATCCATATTTCTCTCAGGTAAGAGCTGCAGAAAGTAGCAGAATGCGGACACAGTAA 1242 0.4388 MCKKSHYTRIKYAHEPPSLLFRFLLVCALVALRAPVAQYPTLRTPTTHLTNDTTTILHHHHHPYINRSRAQISRSSNRSRMSKARVYTDVNVLRPKEYWDYESLNVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1263 413 ProSiteProfiles Protein kinase domain profile. 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g1263 413 PANTHER CASEIN KINASE II SUBUNIT ALPHA 18 413 IPR045216 GO:0004674|GO:0006468
Amo01g1263 413 CDD STKc_CK2_alpha 95 399 IPR045216 GO:0004674|GO:0006468
Amo01g1263 413 Pfam Protein kinase domain 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g1263 413 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 18 413 - -
Amo01g1263 413 Gene3D Phosphorylase Kinase; domain 1 114 190 - -
Amo01g1263 413 SUPERFAMILY Protein kinase-like (PK-like) 83 403 IPR011009 -
Amo01g1263 413 Gene3D Transferase(Phosphotransferase) domain 1 191 399 - -
Amo01g1263 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Amo01g1263 413 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Amo01g1263 413 SMART serkin_6 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1263 Amo-Chr1 20166927 20171406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1263 112 399 Core Cell Cycle Gene Families AT1G76540 29.450 1.91e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Amo01g1263 Pkinase 1.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1263 K03097 - gmx:100819679 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1263 01 20166927 20171406 Amo11g1034 11 30374418 30379148 hybridization
Amo05g0620 05 7362882 7367662 Amo01g1263 01 20166927 20171406 PCT
Amo01g1263 01 20166927 20171406 Amo05g0620 05 7362882 7367662 PCT