Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1213 ATGATAATGAATGGGAACTTCAGCTTCTATGAGAAGACATGGAAGGGCATTTCTCAATCAGCAAAGCAATTGATTTCGAGTCTTCTGACAGTTGATCCTAGTAGGAGACCTAGTGCGCAGGAGCTCCTGAGTCATCCATGGGTCATAGGTGATGTAGCGAAAGATGATCAGATGGACCCTGAGATTGTCTCAAGGTTGCAAAGCTTCAATGCTCGTCGCAAGCTCCGGGCAGCTGCAATTGCAAGCGTATGGAGCACCACAGTGTTCTTGAGAACCAAGAAACTGAAATCCTTGATAGGATCCTATGATCTTACAGAAGAGGAAATTGAAAATCTTAGGATACACTTCAAGAAGATATGTGGAAATGGGGACAATGCCACGCTCTCTAAGTTTGAGGAGGTACTGAAAGCAATAAATATGCCATCACTAATTCCTCTAGCACCACGCATATTTGACTTGTTCGACAACAACCGTGATGGAACGGTTGACATGCGAGAGATTTTATGTGGGCTTTCCAGCCTCAAGAATTCCAAAGGAGATGATGCCCTCCGTTTGTGCTTCCAGGTTAGTCACCAGATGTATGATGCAGATCGATCCGGGTGTATCACAAAGGAAGAAGTAGCATCCATGCTTAGAGCTTTGCCGGATGACTGTCTTCCCGTTGATATCACGGAACCTGGCAAATTGGACGAGATTTTCGACAGAATGGATGCCAACAGTGATGGAAAAGTCACCTTTGAGGAATTCAAAGCTGCTATGCAGAGAGATAGCTCCCTCCAAGATGTAGTCCTTTCTTCCCTTCGCCCACTATAG 813 0.4526 MIMNGNFSFYEKTWKGISQSAKQLISSLLTVDPSRRPSAQELLSHPWVIGDVAKDDQMDPEIVSRLQSFNARRKLRAAAIASVWSTTVFLRTKKLKSLIGSYDLTEEEIENLRIHFKKICGNGDNATLSKFEEVLKAINMPSLIPLAPRIFDLFDNNRDGTVDMREILCGLSSLKNSKGDDALRLCFQVSHQMYDADRSGCITKEEVASMLRALPDDCLPVDITEPGKLDEIFDRMDANSDGKVTFEEFKAAMQRDSSLQDVVLSSLRPL* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1213 270 ProSitePatterns EF-hand calcium-binding domain. 237 249 IPR018247 -
Amo01g1213 270 SUPERFAMILY EF-hand 92 261 IPR011992 -
Amo01g1213 270 SMART efh_1 228 256 IPR002048 GO:0005509
Amo01g1213 270 SMART efh_1 186 214 IPR002048 GO:0005509
Amo01g1213 270 SMART efh_1 146 174 IPR002048 GO:0005509
Amo01g1213 270 PANTHER CALCIUM AND CALCIUM/CALMODULIN-DEPENDENT SERINE/THREONINE-PROTEIN KINASE 1 254 - -
Amo01g1213 270 ProSiteProfiles Protein kinase domain profile. 1 48 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g1213 270 ProSitePatterns EF-hand calcium-binding domain. 195 207 IPR018247 -
Amo01g1213 270 SUPERFAMILY Protein kinase-like (PK-like) 1 66 IPR011009 -
Amo01g1213 270 Pfam EF-hand domain pair 192 254 IPR002048 GO:0005509
Amo01g1213 270 ProSiteProfiles EF-hand calcium-binding domain profile. 142 177 IPR002048 GO:0005509
Amo01g1213 270 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 254 - -
Amo01g1213 270 PRINTS Recoverin family signature 244 264 - -
Amo01g1213 270 PRINTS Recoverin family signature 104 123 - -
Amo01g1213 270 PRINTS Recoverin family signature 150 171 - -
Amo01g1213 270 CDD EFh 193 254 IPR002048 GO:0005509
Amo01g1213 270 Gene3D Transferase(Phosphotransferase) domain 1 2 48 - -
Amo01g1213 270 Gene3D - 62 264 - -
Amo01g1213 270 ProSitePatterns EF-hand calcium-binding domain. 155 167 IPR018247 -
Amo01g1213 270 ProSiteProfiles EF-hand calcium-binding domain profile. 192 217 IPR002048 GO:0005509
Amo01g1213 270 ProSiteProfiles EF-hand calcium-binding domain profile. 224 259 IPR002048 GO:0005509
Amo01g1213 270 Pfam EF hand 151 166 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1213 Amo-Chr1 18625615 18628986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1213 2 257 EF-hand Containing Proteins AT3G10660 29.615 2.89e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Amo01g1213 EF-hand_7 4.4e-12 CL0220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1213 K13412 - gmx:732616 468.774