Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1182 ATGGCCGTTGAGCTCATGATGGGTGGTTACAGGAACGACAACAGCAGCAGCGGCGGCTTCGCCACTTCCAAGGCTGAAGAGAACGCCGTCCAAGAAGCGGCGTCTGGGTTAGAGAGCGTTGAGAAGCTCATAAGGCTTCTCTCCCAGACTCAGCACCAACACTTTAACGGTTCTTCTTCTTCTGCCGTTAACTCTGACGCTACTTTATCAATCGAGAGAGATTGCAAGGCCGTTGCTGACGTCGCCGTTTCGAAGTTCAAGAGAGTTATCTCTCTCCTTGGCCGAACCAGAACCGGCCACGCGCGTTTCAGAAGAGGACCTCTTCACGCGCCTTRCCAATCGCAGACTGAACCGTTTTCTCAAGAACACAGGGTCTTCCATGCGACGCCTCTGCAGCAGATCCCACCCCCTCCACCGCCACCGCCACCACCACCGCCACCACAACTACAGAGCCTCGTTAACCACCACCTGATTCCCAAAAACGGCGTCCTTGAAAGGTCGTCTTCGTCTAAGACTATCAACTTTTCGTACTCCTCTGCTGCTAATTCGTTCTTATCGTCTCTCACCGGCGACGCCGCCGCCGGTGAATCCAAGCAGCAGCACCACCAGCAACAGCCCTCGTCGTCGTCGCCGGCACCGGCGTTTCAGATCACGAACCTGTCGCAGGTTTCGTCTGCGGGGAAGCCACCTCTGTCTTCGTCTTCGCTGAAGAGGAAGTGCAGCTCGGAGAATTTGGGTTCGGGGAAGTGTGGAAGCTCCTCTAGCCGCTGCCATTGCTCCAAAAAGAGCCGGAAAATGAGGTTGAAGAGGGTGGTGAGGGTGCCGGCGATAAGCTTGAAGATGGCTGATATTCCGCCGGATGATTACTCTTGGAGAAAATATGGTCAGAAACCTATTAAAGGATCCCCTCATCCAAGGGGGTACTACAAGTGCAGCAGTGTAAGAGGGTGTCCAGCAAGGAAGCATGTAGAGAGGGCTTTGGATGATCCATCTATGCTGGTAGTCACATATGAAGGAGAACATAATCACTCTCTCACTGCAGCTGATGCTACTAATCTCATCCTAGAATCCTCTTGA 1077 0.5348 MAVELMMGGYRNDNSSSGGFATSKAEENAVQEAASGLESVEKLIRLLSQTQHQHFNGSSSSAVNSDATLSIERDCKAVADVAVSKFKRVISLLGRTRTGHARFRRGPLHAPXQSQTEPFSQEHRVFHATPLQQIPPPPPPPPPPPPPQLQSLVNHHLIPKNGVLERSSSSKTINFSYSSAANSFLSSLTGDAAAGESKQQHHQQQPSSSSPAPAFQITNLSQVSSAGKPPLSSSSLKRKCSSENLGSGKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLTAADATNLILESS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1182 358 MobiDBLite consensus disorder prediction 131 150 - -
Amo01g1182 358 Pfam WRKY DNA -binding domain 287 343 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g1182 358 MobiDBLite consensus disorder prediction 102 165 - -
Amo01g1182 358 MobiDBLite consensus disorder prediction 191 245 - -
Amo01g1182 358 ProSiteProfiles WRKY domain profile. 280 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g1182 358 SUPERFAMILY WRKY DNA-binding domain 282 345 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo01g1182 358 SMART WRKY_cls 285 345 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g1182 358 Pfam Plant zinc cluster domain 237 283 IPR018872 -
Amo01g1182 358 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 21 358 - -
Amo01g1182 358 Gene3D WRKY domain 272 346 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo01g1182 358 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 21 358 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1182 Amo-Chr1 17303673 17306185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1182 26 343 WRKY Transcription Factor Family AT2G24570 44.109 4.53e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo01g1182 WRKY 3.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1182 - - gmx:100170685 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1182 01 17303673 17306185 Amo11g0809 11 17984397 17986868 hybridization