Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1161 ATGTGGGATCTCAATGACTCACCCGATCGGAGGAGAAAGGTTGAGGAATCCGAAGAAGGTTGCTCTTCTCTCAAGAACTCCATAGACGGAGACGACGATAACAACAACAACAACAATAATAATCATAAGGGAAAGAGAGTTGGATCTGTTTCCAATTCAAGCTCCTCCGCAGTTGTCATCGAAGACGGGTCAGAAGAAGAAGAACAACAACAAGAAGAAGGTAGCGTCGTAAGAGCAACAGCGGACATGAAGAAGAGTAGAAGAAGCAAGATATTCGGGTTCTCAGTAACCCACGGTGATGATGATGAAGAAGATGAAGATGAAGATTCCATGGATAGTGAGAACCACAGCCAGGTAGTGACTCGGCAGTTTTTCCCCATGGAGGAGGCTGATATAGCCGCCGCATCATCACCGGCTGGAAGCGGCGGTGACGGTGACGGCGACGGCGACGGAGGTGGCTCTACTTTCCCTCGTGCCCACTGGGTAGGCGTGAAATTTTGCCAATCAGAAACACTTGGTGCTGGAAAATCATCACTGGAAGCTTCTCAACCCATGAAAAAAAGTCGCCGAGGACCACGGTCAAGAAGCTCACAGTACAGAGGAGTCACTTTTTACAGAAGAACCGGTCGATGGGAGTCTCATATTTGGGACTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACTGCACATGCAGCTGCTCGTGCATACGATAGAGCAGCGATTAAGTTCCGAGGAGTGGAGGCAGACATAAACTTTAACATTGAAGACTACGAAGAAGACTTGAAGCAGATGAGCAATCTGACTAAGGAAGAGTTTGTGCACGTTCTTCGCCGACAAAGCACTGGGTTTCCAAGAGGAAGCTCTAAATATAGAGGTGTAACTTTGCACAAATGCGGAAGATGGGAAGCTCGAATGGGACAATTTTTAGGGAAAAAGTACGTCTATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGGGCCTATGATAAAGCAGCAATAAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTACGAAAATGAGCTTAATTCCGTAGAACCCACAGGTAATGCTGCAGATCACAATCTAGATTTAAGTTTGGGCAATTCAAGTTTCAAATCTAGCAACAATAATCGAGCATTGGGGAATCACACCACAAATGTTCAAGATCATCACCAGCAGCTCATGCCATCTGAATCCAATTGGCGAAATGGTGCAAGCAAGCCTAAGCTGGTGAATATCCTACCAAAACCGTGTAATAGAAACATGGAAGCACATGGAGGAAGGGATTTGCACGGAGAGAGTGAAGCCTTGAGGATGCTGAGTCAAACCCACATCCATTCTACTACTTGTTCAGCATCTAATGAAACGCAAAGATATGGACCCTACAGGTCCCCAGGGGAGCCTCAAATGCTTCACAATTTTGCACATCTTCAACCACCAAATTTTTATTTCTCCAGCAGCAGTAGTAATGGGGGTCGCATTGGGAATGATCTTTCATTATCAATGGCGGATCATCATCAACAACAGTTGCAACCAGGACCTCCACAGCATTATTTGGCCACTGCTGCAGCATCATCAGGATTCCCACCACAGATTATTAGACCCTCTTCTCATCACCAAGGTTGGCTGCAGAAAAATGGCTTCCACACAATTATGAGACCCTCCTAA 1689 0.4612 MWDLNDSPDRRRKVEESEEGCSSLKNSIDGDDDNNNNNNNNHKGKRVGSVSNSSSSAVVIEDGSEEEEQQQEEGSVVRATADMKKSRRSKIFGFSVTHGDDDEEDEDEDSMDSENHSQVVTRQFFPMEEADIAAASSPAGSGGDGDGDGDGGGSTFPRAHWVGVKFCQSETLGAGKSSLEASQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSVEPTGNAADHNLDLSLGNSSFKSSNNNRALGNHTTNVQDHHQQLMPSESNWRNGASKPKLVNILPKPCNRNMEAHGGRDLHGESEALRMLSQTHIHSTTCSASNETQRYGPYRSPGEPQMLHNFAHLQPPNFYFSSSSSNGGRIGNDLSLSMADHHQQQLQPGPPQHYLATAAASSGFPPQIIRPSSHHQGWLQKNGFHTIMRPS* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1161 562 Gene3D AP2/ERF domain 289 348 IPR036955 GO:0003700|GO:0006355
Amo01g1161 562 Gene3D AP2/ERF domain 197 256 IPR036955 GO:0003700|GO:0006355
Amo01g1161 562 Pfam AP2 domain 198 246 IPR001471 GO:0003700|GO:0006355
Amo01g1161 562 Pfam AP2 domain 289 338 IPR001471 GO:0003700|GO:0006355
Amo01g1161 562 SUPERFAMILY DNA-binding domain 197 255 IPR016177 GO:0003677
Amo01g1161 562 MobiDBLite consensus disorder prediction 78 98 - -
Amo01g1161 562 ProSiteProfiles AP2/ERF domain profile. 290 347 IPR001471 GO:0003700|GO:0006355
Amo01g1161 562 SMART rav1_2 290 353 IPR001471 GO:0003700|GO:0006355
Amo01g1161 562 SMART rav1_2 198 260 IPR001471 GO:0003700|GO:0006355
Amo01g1161 562 SUPERFAMILY DNA-binding domain 289 349 IPR016177 GO:0003677
Amo01g1161 562 MobiDBLite consensus disorder prediction 27 60 - -
Amo01g1161 562 MobiDBLite consensus disorder prediction 373 397 - -
Amo01g1161 562 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 560 - -
Amo01g1161 562 MobiDBLite consensus disorder prediction 175 199 - -
Amo01g1161 562 PRINTS Ethylene responsive element binding protein signature 291 302 IPR001471 GO:0003700|GO:0006355
Amo01g1161 562 PRINTS Ethylene responsive element binding protein signature 329 349 IPR001471 GO:0003700|GO:0006355
Amo01g1161 562 MobiDBLite consensus disorder prediction 1 26 - -
Amo01g1161 562 CDD AP2 198 255 IPR001471 GO:0003700|GO:0006355
Amo01g1161 562 MobiDBLite consensus disorder prediction 134 155 - -
Amo01g1161 562 MobiDBLite consensus disorder prediction 1 117 - -
Amo01g1161 562 CDD AP2 289 349 IPR001471 GO:0003700|GO:0006355
Amo01g1161 562 ProSiteProfiles AP2/ERF domain profile. 198 254 IPR001471 GO:0003700|GO:0006355
Amo01g1161 562 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1161 Amo-Chr1 16597189 16603161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1161 1 377 AP2-EREBP Transcription Factor Family AT4G36920 62.211 1.12e-131 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Amo01g1161 AP2 4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1161 K09284 - gmx:100792442 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1161 01 16597189 16603161 Amo11g0790 11 16965440 16969677 hybridization
Amo05g0823 05 10165754 10169286 Amo01g1161 01 16597189 16603161 PCT
Amo01g1161 01 16597189 16603161 Amo05g0823 05 10165754 10169286 PCT