Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1154 ATGATTCAGGCTTCAGCCATGCCTGTGATCCGACTCATCTCAGCCAGCACAATCCAAGCACCGAGTCAAGCCGACTCAGATCAGAAAATCCACTTAACACCATGGGATCTTGTGGCCCTCCCAATCAAGATGAACCAAAAAGGCCTTCTCTTTCATCACAAACCATCATCATCACAATTTCAGCATCTCAGACACTCCCTTTCCTCCACCCTCGCTTTCTTTCCACTCCTCGCTGGCCGTCTCATAGCTACTGAAGGCGAAAACAACACCACCTATTGTCATATTCTCTGCAACAATAAAGGATCCCTCTTTGTCCATGCCATAGCAGAGAACACAAGTGTTGATGATATTCTTCAGCCAAAGTACGTTCCTTCCATTGTCAACTCCTTCTTCCCACTTAACGGAGTTAGAAACTGCGAAGGCACGTCTCAGCCGTTGCTTGCGGTGCAGGTCACGGAGCTAGTTGACGGCGTCTTCATCGGCTTCACGATCAACCACGTGGTCGCCGACGGAGAGTCATTATGGCAGTTCATCAATTTATGGTCGGAAATTTCATGTGGCTGCCATAAACTAACTAAAGATCCTTCGCTGGAGCGGTTTTTTCTTGATACCGTTGAACCTCCATTTCCAATACCAGCACCCTCTCCATTCACAAAGGAGGAGAATCAAAACTCGCAAAACTCAACACCAGAAACACCAGTGAGGGTGTTTCATTACACAAAAGAGAAAATAGCACAACTCAAAGCAAAGGCTAATGCAGAGGCCAAAACAGAGAATATATCTTCGCTGCAAGCGCTTTTGACTCACTTTTGGATATCCGTGATTCGTTGCAGTTTTGTGGACGCGCAAGAAGAGGTTTTCATCTTCTTGCCGATTGGCGTTAGAAGGCGAATTGTTCCGCCGTTGCCAGAGAATTATTTCGGGAACGCTTTGCAGATTGGAGTTGTGAGAATGAAAGCAGGGGAGCTGCTTCAAAGTGGGATCGGAAAGGGTGCTATGGAAATGAACAAGATGGTGGCTTCGCACTGCGATGAGAAGGTGAGGAGCCAATATGTTTTTATGGCGAAGAAGCCGGTCTTGCTTCAACTCGGTGGTGCCGTTGGTGCGAAGGCTTTGGCCACTGGAAGCTCGCCAAGGTTCAATGTTTATGGTAATGACTTTGGTTGGGGAAAGCCATTGGCGGTTAGGGCTGGTTCGAATATTGGAGAAGGAATGGTTGCTTTATTTGGAGGGAAGGAAAAAGGGAGTGTTGACGTTCAAGTTTGCCTCCCTTATGAGATCTTGGAGGCCATGGAAAGTGATTCCGAGTTCATAGATGCCTTGTAA 1326 0.4721 MIQASAMPVIRLISASTIQAPSQADSDQKIHLTPWDLVALPIKMNQKGLLFHHKPSSSQFQHLRHSLSSTLAFFPLLAGRLIATEGENNTTYCHILCNNKGSLFVHAIAENTSVDDILQPKYVPSIVNSFFPLNGVRNCEGTSQPLLAVQVTELVDGVFIGFTINHVVADGESLWQFINLWSEISCGCHKLTKDPSLERFFLDTVEPPFPIPAPSPFTKEENQNSQNSTPETPVRVFHYTKEKIAQLKAKANAEAKTENISSLQALLTHFWISVIRCSFVDAQEEVFIFLPIGVRRRIVPPLPENYFGNALQIGVVRMKAGELLQSGIGKGAMEMNKMVASHCDEKVRSQYVFMAKKPVLLQLGGAVGAKALATGSSPRFNVYGNDFGWGKPLAVRAGSNIGEGMVALFGGKEKGSVDVQVCLPYEILEAMESDSEFIDAL* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1154 441 Gene3D - 215 433 IPR023213 -
Amo01g1154 441 Pfam Transferase family 17 437 - -
Amo01g1154 441 Gene3D - 9 208 IPR023213 -
Amo01g1154 441 PANTHER ANTHRANILATE N-HYDROXYCINNAMOYL/BENZOYLTRANSFERASE-LIKE PROTEIN 10 440 - -
Amo01g1154 441 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 10 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1154 Amo-Chr1 16217246 16218826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1154 43 432 Monolignol Biosynthesis Gene Families AT5G48930 29.383 7.79e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1154 - - gmx:100797643 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1154 01 16217246 16218826 Amo11g0780 11 16546878 16548328 hybridization