Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1142 ATGCAAAAGGAAAAGGAAGCAATCACCGCCAATAAGGAGGGCACTAATAAGAAGGACATAGGAATAATGGAATGTTGCCATGGAAAAGAGGAAACCCTACCACCTGGGTTTCGATTTCATCCAACCGACGAAGAACTCATTACTTGCTATCTCATAAACAAGATCTCGGATTCAAACTTTTCAGGCAGGGCAATAACTGATGTTGATCTCAATAAATGTGAGCCATGGGAGCTTCCAGGGAAGGCGAAGATGGGAGAAAAAGAATGGTACTTCTTCAGCCTGAGAGATCGTAAGTACCCAACTGGGGTGCGAACGAACCGAGCCACAAACACGGGGTATTGGAAGACCACCGGAAAAGACAAAGAGATCCTTAATAGTGTTACATCGGAGCTAGTTGGGATGAAGAAAACTTTGGTTTTCTACAAAGGAAGAGCCCCAAGGGGAGAGAAGAGTAATTGGGTCATGCATGAATATCGCATTCATTCTAAATCCACCTTTCGAACAACCAAGGATGAATGGGTGGTTTGCCGTGTGTTCCAGAAGAGTGCCGGTGCAAAGAAGTACCCTTCTTCCAACCATGCAAGTAGGGCAATGAACCCTTTCAACCTTGAAATAGGTCACCACAATATTGTGCCGCCGCCGCCAATGATGCAACTCGGAGACCCCGCCGCCGCTCATTTCCTCTATGGAAGGAACTATATGAATACTGCAGAGTTAGCAGAAGTAGCTAGGGTTTTGCGTGTTGGTACTGGATCAACCAGTACCAACCTACCCGGGATGCAGCCTCAGATAAATTATCCAGTGGCTGCATCATCCCCAGGAGTTGGATTCACAATTTCAGGGCTCAATTTAAATCTAGGAGGCGGAGGAGGCGGAACAGTAGTGGCCACAACACAACCAGTTTTGCGGCCCATGCAGCCGACTCCTCCGTCCCAAACATTGGGTATGGTTCCTCATCATCAAGTTCATCATGATGTGAGTTCCAACATGATTTCTGGTGCTGAGAATGTGGGTTACGTCAATGAAATAAGCAACACAAATGGTGGTCATGGAAATAGGTTTATGGGCATGGATCATTGCATGGATCTTGATAATTACTGGCCTTCCTACTAA 1113 0.4627 MQKEKEAITANKEGTNKKDIGIMECCHGKEETLPPGFRFHPTDEELITCYLINKISDSNFSGRAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTTKDEWVVCRVFQKSAGAKKYPSSNHASRAMNPFNLEIGHHNIVPPPPMMQLGDPAAAHFLYGRNYMNTAELAEVARVLRVGTGSTSTNLPGMQPQINYPVAASSPGVGFTISGLNLNLGGGGGGTVVATTQPVLRPMQPTPPSQTLGMVPHHQVHHDVSSNMISGAENVGYVNEISNTNGGHGNRFMGMDHCMDLDNYWPSY* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1142 370 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 367 - -
Amo01g1142 370 Gene3D NAC domain 42 185 IPR036093 GO:0003677|GO:0006355
Amo01g1142 370 ProSiteProfiles NAC domain profile. 33 181 IPR003441 GO:0003677|GO:0006355
Amo01g1142 370 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 20 367 - -
Amo01g1142 370 SUPERFAMILY NAC domain 30 181 IPR036093 GO:0003677|GO:0006355
Amo01g1142 370 Pfam No apical meristem (NAM) protein 34 160 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1142 Amo-Chr1 15982731 15986077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1142 29 370 NAC Transcription Factor Family AT2G24430 52.113 2.40e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo01g1142 NAM 4.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1142 - - gmx:100805060 523.087