Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1139 ATGGTAGCTGTGGAAACTAATCGCGTGATGGAAAGGGAACGAACCCGCAAACGTCCTCGTCTCGCGTGGGACGTGCCTCCACCACCACCACCACCATCCCAGCAGGCTGAAAGGGGTGTGGTTGATGAAGGAATCGAAAAGAGGCACGCCTCGCCTCCAAGAAGGGACGACGATCGTGAAGGCCATTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGATATAAAATCCTCAGCAAGATGGGTGAAGGCACATTTGGTCGAGTTTTGGAATGTTGGGATCGCCAAGCCAGAGAATACGTTGCTGTCAAGGTAATTAGGAGCATTCGGAAATACCGCGAAGCAGCAATGCTTGAAATTGATGTGCTTCAACGTCTGTCTAAGGGTGAAATAGGAATCTCACGCTGTGTGCAGATCCGGAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGACCTTGTTCGGGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACATCTAATCCACACTGACCTGAAGCCAGAAAATATACTTCTTATTTCTTCTGAATATGTAAAGCTCCCTACCCGTAAGAGGATTACCTCAGGTGAAATGCAATTCAGATGCTTGCCCAAGTCTAGTGCCATTAAGCTGATTGATTTTGGTAGTACTGCTTTTGATCATCAGATTCATAACTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGATCATTCTAGGTATAGGGTGGTCCTACCCGTGTGATTTGTGGAGTGTTGGTTGTATTCTTATCGAACTATTAACAGGTGAAGCATTGTTTCAAACTCATGAAAACTTGGAACACCTGGCAATGATGGAGAGAGTGCTGGGACCTATACCCGAACACATGGTCCGAAGGTCTACCCGAGGAGCAGAGAAATATTTCAGGCGTGGAGCAAGACTAAATTGGCCTGAAGGAGCTGTTTCAAGGGAAAGCATCCGTGCTGTTAAGAAGCTCGATCTTCTTGAGGATATTGTATCAAGCCGTGTGGATTCTTCAAGATCATCTTTAACTGATTTGTTACATGGCGTATTGACTTATGATCCGAATGAACGCCTAACAGCTCGACAAGCCCTTGATCATCCCTTCTTTAGAAATCCAACTTAA 1215 0.4461 MVAVETNRVMERERTRKRPRLAWDVPPPPPPPSQQAERGVVDEGIEKRHASPPRRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQAREYVAVKVIRSIRKYREAAMLEIDVLQRLSKGEIGISRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELHLIHTDLKPENILLISSEYVKLPTRKRITSGEMQFRCLPKSSAIKLIDFGSTAFDHQIHNSIVSTRHYRAPEIILGIGWSYPCDLWSVGCILIELLTGEALFQTHENLEHLAMMERVLGPIPEHMVRRSTRGAEKYFRRGARLNWPEGAVSRESIRAVKKLDLLEDIVSSRVDSSRSSLTDLLHGVLTYDPNERLTARQALDHPFFRNPT* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1139 404 PANTHER BNAA07G37640D PROTEIN 48 401 - -
Amo01g1139 404 ProSiteProfiles Protein kinase domain profile. 75 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g1139 404 Gene3D Phosphorylase Kinase; domain 1 62 155 - -
Amo01g1139 404 MobiDBLite consensus disorder prediction 7 21 - -
Amo01g1139 404 CDD PKc_CLK 62 400 - -
Amo01g1139 404 MobiDBLite consensus disorder prediction 40 61 - -
Amo01g1139 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Amo01g1139 404 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 48 401 - -
Amo01g1139 404 Gene3D Transferase(Phosphotransferase) domain 1 129 400 - -
Amo01g1139 404 SMART serkin_6 75 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g1139 404 SUPERFAMILY Protein kinase-like (PK-like) 62 402 IPR011009 -
Amo01g1139 404 MobiDBLite consensus disorder prediction 1 61 - -
Amo01g1139 404 Pfam Protein kinase domain 75 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1139 Amo-Chr1 15946291 15950257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1139 74 402 Core Cell Cycle Gene Families AT3G48750 27.381 1.14e-26 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Amo01g1139 Pkinase 7.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1139 K08287 - gmx:100782453 680.633