Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1114 ATGGATTGGGTAAGAGGAGACCCTGTTGGTCGAGGAAGCTTCGCCACAGTTAGTTTAGCGTTTTCAAAAAACAGTGCTGATAAATCTTTCATTTCTCCCACCGCCGTGAAGTCCTGTGAGGTTGGAGCCTCCTACTGGCTCAAGAACGAGAAACACGTGCTCGATCGTCTCGGCAACACGTGCCCACGAATCATCACGTGCTTTGGCGATGACTACACCTTGGAGAATGGCCGCCAATACTACAACCTCTTCCTAGAGTACGCCTCTCGAGGCAACCTCTCGGATGAGCTTGACCGCCGCGGAGGGTGTATCCCAGAGCTCGAAGTGCGGCACCACGTGAAGTCTATCGTAGAAGGCCTCATCCATATTCACAACACTGGATTCGCCCACTGCGACATAAAGCTTCAAAACATACTTATGTTCCAAAACGGTCAGGTTAAGATTGCGGATTTTGGTTTAGCGAAAGAAACAGGAGAGAAACAGGGGAATGAGAAGAAAAATAAGTGTTTCGAATGCAGGGGAACTCCTATGTTTATGCCGCCGGAATTGGTTAACAACGGCGAGTGCGAGTCTCCGGCGGATATTTGGGCCTTAGGGTGTACTGTAATAGAGATGGTGACTGGTAAGCCGGCATGGAACGTTGCAAAAGATTCGAATATTTGGTCTTTGATGCTTCGAATCGGAACAGGGGAAGAAGTCCCTTGTATTCCAGATAAAATTTCGAAAGAAGGAAAGGATTTCTTGGACAAGTGTTTTGTTAAAAATCCTAAAAAGAGATGGACGGCCGAAATGCTTCTAAATCATCCGTTTCTGGCTTCTCATACTGTTTCATTGAAAGCTGGCTTCATGGCTAATAATTATTCTTCGCCGCGAAGCCACTTTGATTTTCCAGACTGGGTTTGTTCTGTTCCGAGCTCTCACGAGCGCCAGTCGAATTTCAATTTTGATTCGTTTTCGGCCGTGAATCGAATTCAGAAGCTTGCGACAGAGGATCGAGTGCGGGAGAATTGGTCGGAATCTGATGGTTGGACTTGGACCAGTATCAGGGGGAATTAA 1056 0.4716 MDWVRGDPVGRGSFATVSLAFSKNSADKSFISPTAVKSCEVGASYWLKNEKHVLDRLGNTCPRIITCFGDDYTLENGRQYYNLFLEYASRGNLSDELDRRGGCIPELEVRHHVKSIVEGLIHIHNTGFAHCDIKLQNILMFQNGQVKIADFGLAKETGEKQGNEKKNKCFECRGTPMFMPPELVNNGECESPADIWALGCTVIEMVTGKPAWNVAKDSNIWSLMLRIGTGEEVPCIPDKISKEGKDFLDKCFVKNPKKRWTAEMLLNHPFLASHTVSLKAGFMANNYSSPRSHFDFPDWVCSVPSSHERQSNFNFDSFSAVNRIQKLATEDRVRENWSESDGWTWTSIRGN* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1114 351 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 317 - -
Amo01g1114 351 Gene3D Transferase(Phosphotransferase) domain 1 2 333 - -
Amo01g1114 351 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 317 - -
Amo01g1114 351 CDD STKc_MAPKKK 2 271 - -
Amo01g1114 351 SUPERFAMILY Protein kinase-like (PK-like) 3 304 IPR011009 -
Amo01g1114 351 SMART serkin_6 3 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g1114 351 ProSiteProfiles Protein kinase domain profile. 3 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g1114 351 Pfam Protein kinase domain 6 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g1114 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Amo01g1114 351 ProSitePatterns Protein kinases ATP-binding region signature. 9 37 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1114 Amo-Chr1 15240230 15241660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1114 1 344 MAP Kinase Kinase Kinase AT5G67080 48.870 7.95e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Amo01g1114 Pkinase 1.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1114 - - aprc:113858661 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1114 01 15240230 15241660 Amo11g0768 11 15948863 15950353 hybridization
Amo05g0797 05 9754004 9755459 Amo01g1114 01 15240230 15241660 PCT
Amo01g1114 01 15240230 15241660 Amo05g0797 05 9754004 9755459 PCT