Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1107 ATGGCCTCAGATTGCAACAAAGGGTTCGCAGACAGTTACATGTTACTGAACCACGAAGACGCACACTTGGTTGACCTCGTTAAACTCTTGTTTTCGAAGAACGTGGGGAAGAGAAAGTTTGTTGATAGCCATGCAGGTGGAGATTATGAAGACAGCTTCGCGCACCGTTGGCTTATCTTTGTCTCTATCGTTCTCCAGAAACTGTTACAGTTTGTTGCAAAACCGTTAGCCTTCCTTGGAAACTGTATTGAGCGCTTCGTCAACTTGCTTCTTCTCAACGGTGGTTTCTTCTTCCTCATACTTAACTTTCTCAGGGGGAAGGTGATTTTGCCTGATCGTAAATCAGCGAAGTATTTGTCTTTAATTGGAAGCTTAGACGCACGAGTTCAGTTGGATGCAGTAAAACGTGACGATTGCACATATTATGTTGCACTTTCAATGATGGCTGCCAAAGCTGCTTATGAGAATGCAGCGTTTGTCCAAGCTACCATTCAAGATGTTTGGAAGATGGAATTTGTGGGGTGTTACAACTGCTGGAATGAATATCAAGGAAAGGCAACAACACAAGTGTTAATTTTCTTGGATAAATACGAGGACCGTGACACTTATGTTGTAGCCTTCAGAGGAACGGAACCCTTCAACGCCGACGACTGGTGCACGGACATCGACATCTCATGGTACGGAATCCCCGGCGTCGGAAGAATGCACGGCGGCTTCATGAAAGCCTTGGGGCTACAACAGAATGTGGGGTGGCCAAAGGATATCCAACGAGACGAAAATCTTCCACCATTGGCATATTATCTTCTGAGGGACATCCTAAGAAAAGGGCTAAGTGAAAATGAGAAAGCAAAGTTCATAGTAACGGGTCATAGTTTGGGAGGTGCACTTGCAATTTTGTTTGGGACAATTTTGTTTTTGCAAGATGAGACATTGTTGTTGGAGAGGCTTGAAGGGATCTACACGTTTGGACAGCCAAGAGTTGGAGATGAGGCGTATACGAGGTATATGAAGAAGAAATTGAAGGAACATTCTGTTATATATTGTAGGTTTGTTTACAATAATGATATAGTTCCAAGGTTGCCGTACGATGACAAGGAAATGATGTTCAAGCACTTTGGCACATGTCTTTTCTTTAATTGGCGCTACAAACTCAAGGTTCTTGAGGATGAACCGAACAAGAACTACTTTTCGCCATGGTGCATTATACCCATGGCAGTGCAGGCCATTTTGGAACTAATAAGGAGCTTTATAATTGCGTACATCAATGGACCTAACTATAGAGAAGGATGGTTTCTATTTGCTTTTAGGACCGTAGGCTTATTAATTCCAGGCTTACCTAATCATGGTCCCCAAGATTACCTTAATTCCACGCTTTTGGGATCAATTGAAAAGCATTTGAAATTCGAGTAA 1410 0.4277 MASDCNKGFADSYMLLNHEDAHLVDLVKLLFSKNVGKRKFVDSHAGGDYEDSFAHRWLIFVSIVLQKLLQFVAKPLAFLGNCIERFVNLLLLNGGFFFLILNFLRGKVILPDRKSAKYLSLIGSLDARVQLDAVKRDDCTYYVALSMMAAKAAYENAAFVQATIQDVWKMEFVGCYNCWNEYQGKATTQVLIFLDKYEDRDTYVVAFRGTEPFNADDWCTDIDISWYGIPGVGRMHGGFMKALGLQQNVGWPKDIQRDENLPPLAYYLLRDILRKGLSENEKAKFIVTGHSLGGALAILFGTILFLQDETLLLERLEGIYTFGQPRVGDEAYTRYMKKKLKEHSVIYCRFVYNNDIVPRLPYDDKEMMFKHFGTCLFFNWRYKLKVLEDEPNKNYFSPWCIIPMAVQAILELIRSFIIAYINGPNYREGWFLFAFRTVGLLIPGLPNHGPQDYLNSTLLGSIEKHLKFE* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1107 469 PANTHER TRIACYLGLYCEROL LIPASE-RELATED 3 468 - -
Amo01g1107 469 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 3 468 IPR044819 GO:0004806|GO:0006629
Amo01g1107 469 Pfam Lipase (class 3) 204 364 IPR002921 GO:0006629
Amo01g1107 469 Gene3D alpha/beta hydrolase 132 400 IPR029058 -
Amo01g1107 469 CDD Lipase_3 161 379 - -
Amo01g1107 469 SUPERFAMILY alpha/beta-Hydrolases 145 383 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1107 Amo-Chr1 15006345 15016372 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1107 13 459 Acyl Lipid Metabolism Gene Families AT5G67050 50.439 8.49e-160 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1107 - - gmx:100795779 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1107 01 15006345 15016372 Amo11g0761 11 15669763 15676661 hybridization