Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1104 ATGGCGGCCAAAACCAGCGACGACTGCGACAAGGGCTTCGCAGACAGCTACATGCTGCTGAAGCACGAAGACGCCCGGTTCTTCGATCTGCTTCACGTCCTCACTTCGCGAAACATGTCGCGAAGGAGGTTTGTGGAGAGCCACGCGGAGGGCGAAGTGGATGAGAGCTTCGGCCACCGGTGGCTTATATTCATCTCTATCTTGGCCCAGAAGCTCTTGCAGTTGATGGCCAAGCCATTAGCGTTCTTTGGGATCTGCGTTGAGCTTCTCATCAACTTGATTGCCCTCAACGGTGGTATCTTCTATATCATATTTAACTTTCTAAGAGGGAAGTTAGTGTTGCCGGATCCAAGATCAGCAAAGTATTTGTCTTGTATTGGGAATTTAGATGTGCGAGTAAAATTGGATGGCATCACTCGTGAAGATAGCAAATACTATATTGCACTTTCTATGATGGCCTCAAAAGCATCCTATGAAAATGCTGCTCATATTGAAACTACTGTCGAAGATCACTGGAAGATGGAATATGTGGGCTTCTTTGACTGCTGGAATGAGTATCAAGAAAAGGCGTCAACTCAAGTGTTGATAGCTTTAGACAAACACCAAAACCGGGACACATATGTTGTGGCCTTCAGAGGAACAGAACCCTTCAACGCGGACGATTGGTGCACGGACATCGACATCTCATGGTACGGAATCCCCGGCGTGGGAAGAATGCACGGCGGCTTCATGAAAGCATTAGGGCTACAAAAGAATGTGGGGTGGCCAAAGGAAATGGAAAGAGACGAGCGTCTTCCGCCATTAGCATATTATGTTATTAGGGACATTCTAAGAAAAAGGCTGAGTGAAAATGAGAAAGCAAAGTTCATAGTAACGGGTCATAGTTTGGGAGGTGCACTTGCAATATTGTTTGGGACAGTGTTGTTTTTGCATGAAGAGACGTTGTTGTTGGAGAGGCTTGAAGGGATCTACACGTTTGGGCAACCGAGAGTTGGAGATGAAGCATATGCAATTTATATGAAACAGAAATTGAAGGAACATTCGGTAAGGTATTGTAGGTTTGTTTATTGCAATGATATAGTTCCGAGGTTGCCGTACGATGATAAGGAAATGATGTTCAAGCACTTTGGAATATGCCTTTTCTTTGATTGGCGATATCAGCTCAAGGTTCTTGAAGAAGAACCGAACAAGAACTACTTCTCGCTATGGTGTGTGATACCCATGACAATGAATGCAATTTTGGAACTAATAAGGAGCTTTACTATTGCATACCAAAATGGACCTCACTACAAAGAAGGATGGCTTCTATTTGCTTTCAGGGTTATTGGGGTATTAATTCCAGGCTTACCTGCTCATGGTCCCCAAGATTATCTTAATTCCACTCTTTTGGGACCAATAGAAAAACACTTAAAAGCAGAGTGA 1422 0.4416 MAAKTSDDCDKGFADSYMLLKHEDARFFDLLHVLTSRNMSRRRFVESHAEGEVDESFGHRWLIFISILAQKLLQLMAKPLAFFGICVELLINLIALNGGIFYIIFNFLRGKLVLPDPRSAKYLSCIGNLDVRVKLDGITREDSKYYIALSMMASKASYENAAHIETTVEDHWKMEYVGFFDCWNEYQEKASTQVLIALDKHQNRDTYVVAFRGTEPFNADDWCTDIDISWYGIPGVGRMHGGFMKALGLQKNVGWPKEMERDERLPPLAYYVIRDILRKRLSENEKAKFIVTGHSLGGALAILFGTVLFLHEETLLLERLEGIYTFGQPRVGDEAYAIYMKQKLKEHSVRYCRFVYCNDIVPRLPYDDKEMMFKHFGICLFFDWRYQLKVLEEEPNKNYFSLWCVIPMTMNAILELIRSFTIAYQNGPHYKEGWLLFAFRVIGVLIPGLPAHGPQDYLNSTLLGPIEKHLKAE* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1104 473 Pfam Lipase (class 3) 208 368 IPR002921 GO:0006629
Amo01g1104 473 SUPERFAMILY alpha/beta-Hydrolases 142 385 IPR029058 -
Amo01g1104 473 Gene3D alpha/beta hydrolase 137 409 IPR029058 -
Amo01g1104 473 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 7 473 IPR044819 GO:0004806|GO:0006629
Amo01g1104 473 CDD Lipase_3 144 383 - -
Amo01g1104 473 PANTHER TRIACYLGLYCEROL LIPASE-RELATED 7 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1104 Amo-Chr1 14944532 14952073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1104 5 463 Acyl Lipid Metabolism Gene Families AT5G67050 50.851 5.48e-167 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo01g1104 Lipase_3 1.8e-38 CL0028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1104 - - adu:107480219 785.023